/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
package jalview.jbgui;
-import jalview.datamodel.SequenceI;
-import jalview.gui.AlignmentPanel;
-import jalview.gui.Desktop;
-import jalview.jbgui.PDBDocFieldPreferences.PreferenceSource;
-import jalview.util.MessageManager;
-
import java.awt.BorderLayout;
import java.awt.CardLayout;
+import java.awt.Component;
import java.awt.Dimension;
import java.awt.FlowLayout;
+import java.awt.Font;
+import java.awt.GridLayout;
+import java.awt.Point;
import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
+import java.awt.event.KeyAdapter;
+import java.awt.event.KeyEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.Arrays;
+import java.util.HashMap;
+import java.util.Map;
import javax.swing.ImageIcon;
import javax.swing.JButton;
import javax.swing.JFrame;
import javax.swing.JInternalFrame;
import javax.swing.JLabel;
+import javax.swing.JList;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
+import javax.swing.JSeparator;
import javax.swing.JTabbedPane;
import javax.swing.JTable;
import javax.swing.JTextField;
+import javax.swing.ListCellRenderer;
+import javax.swing.Timer;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import javax.swing.event.DocumentEvent;
import javax.swing.event.DocumentListener;
+import javax.swing.event.InternalFrameEvent;
+import javax.swing.table.TableColumn;
+
+import jalview.datamodel.SequenceI;
+import jalview.fts.api.FTSDataColumnI;
+import jalview.fts.core.FTSDataColumnPreferences;
+import jalview.gui.AlignmentPanel;
+import jalview.gui.Desktop;
+import jalview.gui.JvSwingUtils;
+import jalview.gui.StructureViewer;
+import jalview.util.MessageManager;
+import net.miginfocom.swing.MigLayout;
@SuppressWarnings("serial")
/**
- * GUI layout for structure chooser
+ * GUI layout for structure chooser
+ *
* @author tcnofoegbu
*
*/
-public abstract class GStructureChooser extends JPanel implements
- ItemListener
+public abstract class GStructureChooser extends JPanel
+ implements ItemListener
{
+ private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
+
+ public static final String VIEWS_FILTER = "VIEWS_FILTER";
+
+ protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE";
+
+ protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID";
+
+ /*
+ * 'cached' structure view
+ */
+ protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB";
+
+ protected JPanel statusPanel = new JPanel();
+
+ public JLabel statusBar = new JLabel();
+
protected String frameTitle = MessageManager
.getString("label.structure_chooser");
protected JInternalFrame mainFrame = new JInternalFrame(frameTitle);
- protected JComboBox<FilterOption> cmb_filterOption = new JComboBox<FilterOption>();
+ protected JComboBox<FilterOption> cmb_filterOption = new JComboBox<>();
protected AlignmentPanel ap;
- protected JLabel lbl_result = new JLabel(
- MessageManager.getString("label.select"));
+ protected StringBuilder errorWarning = new StringBuilder();
- protected JButton btn_view = new JButton();
+ protected JButton btn_add;
- protected JButton btn_cancel = new JButton();
+ protected JButton btn_newView;
protected JButton btn_pdbFromFile = new JButton();
- protected JTextField txt_search = new JTextField(14);
-
- private JPanel pnl_actions = new JPanel();
+ // holder for icon and button
+ protected JPanel pnl_queryTDB;
- private JPanel pnl_filter = new JPanel();
+ protected JButton btn_queryTDB = new JButton();
- private JPanel pnl_idInput = new JPanel(new FlowLayout());
+ protected JCheckBox chk_superpose = new JCheckBox(
+ MessageManager.getString("label.superpose_structures"));
- private JPanel pnl_fileChooser = new JPanel(new FlowLayout());
-
- private JPanel pnl_idInputBL = new JPanel(new BorderLayout());
-
- private JPanel pnl_fileChooserBL = new JPanel(new BorderLayout());
+ protected JTextField txt_search = new JTextField(14);
protected JPanel pnl_switchableViews = new JPanel(new CardLayout());
protected CardLayout layout_switchableViews = (CardLayout) (pnl_switchableViews
.getLayout());
- private BorderLayout mainLayout = new BorderLayout();
-
- protected JCheckBox chk_rememberSettings = new JCheckBox(
- MessageManager.getString("label.dont_ask_me_again"));
-
protected JCheckBox chk_invertFilter = new JCheckBox(
MessageManager.getString("label.invert"));
- protected ImageIcon loadingImage = new ImageIcon(getClass().getResource(
- "/images/loading.gif"));
+ protected ImageIcon loadingImage = new ImageIcon(
+ getClass().getResource("/images/loading.gif"));
+
+ protected ImageIcon goodImage = new ImageIcon(
+ getClass().getResource("/images/good.png"));
+
+ protected ImageIcon errorImage = new ImageIcon(
+ getClass().getResource("/images/error.png"));
- protected ImageIcon goodImage = new ImageIcon(getClass().getResource(
- "/images/good.png"));
+ protected ImageIcon warningImage = new ImageIcon(
+ getClass().getResource("/images/warning.gif"));
- protected ImageIcon errorImage = new ImageIcon(getClass().getResource(
- "/images/error.png"));
+ protected ImageIcon tdbImage = new ImageIcon(getClass()
+ .getResource("/images/3d-beacons-logo-transparent.png"));
protected JLabel lbl_loading = new JLabel(loadingImage);
protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
+ protected AssociateSeqPanel idInputAssSeqPanel = new AssociateSeqPanel();
- protected AssciateSeqPanel idInputAssSeqPanel = new AssciateSeqPanel();
+ protected AssociateSeqPanel fileChooserAssSeqPanel = new AssociateSeqPanel();
- protected AssciateSeqPanel fileChooserAssSeqPanel = new AssciateSeqPanel();
+ protected JComboBox<StructureViewer> targetView = new JComboBox<>();
- protected static final String VIEWS_FILTER = "VIEWS_FILTER";
+ protected JTable tbl_local_pdb = new JTable();
- protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE";
+ protected JTabbedPane pnl_filter = new JTabbedPane();
- protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID";
+ protected abstract FTSDataColumnPreferences getFTSDocFieldPrefs();
- protected JTable tbl_summary = new JTable();
+ protected abstract void setFTSDocFieldPrefs(
+ FTSDataColumnPreferences newPrefs);
- protected JScrollPane scrl_foundStructures = new JScrollPane(
- tbl_summary);
+ protected FTSDataColumnI[] previousWantedFields;
- private JTabbedPane tabbedPane = new JTabbedPane();
+ protected static Map<String, Integer> tempUserPrefs = new HashMap<>();
- private PDBDocFieldPreferences pdbDocFieldPrefs = new PDBDocFieldPreferences(
- PreferenceSource.STRUCTURE_CHOOSER);
+ private JTable tbl_summary = new JTable()
+ {
+ private boolean inLayout;
+
+ @Override
+ public boolean getScrollableTracksViewportWidth()
+ {
+ return hasExcessWidth();
+
+ }
+
+ @Override
+ public void doLayout()
+ {
+ if (hasExcessWidth())
+ {
+ autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS;
+ }
+ inLayout = true;
+ super.doLayout();
+ inLayout = false;
+ autoResizeMode = AUTO_RESIZE_OFF;
+ }
+
+ protected boolean hasExcessWidth()
+ {
+ return getPreferredSize().width < getParent().getWidth();
+ }
+
+ @Override
+ public void columnMarginChanged(ChangeEvent e)
+ {
+ if (isEditing())
+ {
+ removeEditor();
+ }
+ TableColumn resizingColumn = getTableHeader().getResizingColumn();
+ // Need to do this here, before the parent's
+ // layout manager calls getPreferredSize().
+ if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF
+ && !inLayout)
+ {
+ resizingColumn.setPreferredWidth(resizingColumn.getWidth());
+ String colHeader = resizingColumn.getHeaderValue().toString();
+ tempUserPrefs.put(colHeader, resizingColumn.getWidth());
+ }
+ resizeAndRepaint();
+ }
+
+ @Override
+ public String getToolTipText(MouseEvent evt)
+ {
+ String toolTipText = null;
+ java.awt.Point pnt = evt.getPoint();
+ int rowIndex = rowAtPoint(pnt);
+ int colIndex = columnAtPoint(pnt);
+
+ try
+ {
+ if (getValueAt(rowIndex, colIndex) == null)
+ {
+ return null;
+ }
+ toolTipText = getValueAt(rowIndex, colIndex).toString();
+ } catch (Exception e)
+ {
+ // e.printStackTrace();
+ }
+ toolTipText = (toolTipText == null ? null
+ : (toolTipText.length() > 500
+ ? JvSwingUtils.wrapTooltip(true,
+ "\"" + toolTipText.subSequence(0, 500)
+ + "...\"")
+ : JvSwingUtils.wrapTooltip(true, toolTipText)));
+ return toolTipText;
+ }
+ };
public GStructureChooser()
{
+ }
+
+ protected void initDialog()
+ {
+
try
{
jbInit();
mainFrame.pack();
} catch (Exception e)
{
+ System.out.println(e); // for JavaScript TypeError
e.printStackTrace();
}
}
+ // BH SwingJS optimization
+ // (a) 100-ms interruptable timer for text entry -- BH 1/10/2019
+ // (b) two-character minimum, at least for JavaScript.
+
+ private Timer timer;
+
+ protected void txt_search_ActionPerformedDelayed()
+ {
+ if (timer != null)
+ {
+ timer.stop();
+ }
+ timer = new Timer(300, new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ txt_search_ActionPerformed();
+ }
+ });
+ timer.setRepeats(false);
+ timer.start();
+ }
+ //
+
/**
* Initializes the GUI default properties
*
*/
private void jbInit() throws Exception
{
+ Integer width = tempUserPrefs.get("structureChooser.width") == null
+ ? 800
+ : tempUserPrefs.get("structureChooser.width");
+ Integer height = tempUserPrefs.get("structureChooser.height") == null
+ ? 400
+ : tempUserPrefs.get("structureChooser.height");
tbl_summary.setAutoCreateRowSorter(true);
- btn_view.setFont(new java.awt.Font("Verdana", 0, 12));
- btn_view.setText(MessageManager.getString("action.view"));
- btn_view.addActionListener(new java.awt.event.ActionListener()
+ tbl_summary.getTableHeader().setReorderingAllowed(false);
+ tbl_summary.addMouseListener(new MouseAdapter()
{
- public void actionPerformed(ActionEvent e)
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ if (!popupAction(e))
+ {
+ super.mousePressed(e);
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ if (!popupAction(e))
+ {
+ validateSelections();
+ }
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ if (!popupAction(e))
+ {
+ validateSelections();
+ }
+ }
+
+ boolean popupAction(MouseEvent e)
+ {
+ if (e.isPopupTrigger())
+ {
+ Point pt = e.getPoint();
+ int selectedRow = tbl_summary.rowAtPoint(pt);
+ if (showPopupFor(selectedRow, pt.x, pt.y))
+ {
+ return true;
+ }
+ }
+ return false;
+ }
+ });
+ tbl_summary.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
{
- ok_ActionPerformed();
+ validateSelections();
+ switch (evt.getKeyCode())
+ {
+ case KeyEvent.VK_ESCAPE: // escape key
+ mainFrame.dispose();
+ break;
+ case KeyEvent.VK_ENTER: // enter key
+ if (btn_add.isEnabled())
+ {
+ add_ActionPerformed();
+ }
+ break;
+ case KeyEvent.VK_TAB: // tab key
+ if (evt.isShiftDown())
+ {
+ pnl_filter.requestFocus();
+ }
+ else
+ {
+ btn_add.requestFocus();
+ }
+ evt.consume();
+ break;
+ default:
+ return;
+ }
}
});
- btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12));
- btn_cancel.setText(MessageManager.getString("action.cancel"));
+
+ JButton btn_cancel = new JButton(
+ MessageManager.getString("action.cancel"));
+ btn_cancel.setFont(VERDANA_12);
btn_cancel.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ closeAction(pnl_filter.getHeight());
+ }
+ });
+ btn_cancel.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ if (evt.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ closeAction(pnl_filter.getHeight());
+ }
+ }
+ });
+
+ tbl_local_pdb.setAutoCreateRowSorter(true);
+ tbl_local_pdb.getTableHeader().setReorderingAllowed(false);
+ tbl_local_pdb.addMouseListener(new MouseAdapter()
+ {
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ validateSelections();
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ validateSelections();
+ }
+ });
+ tbl_local_pdb.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ validateSelections();
+ switch (evt.getKeyCode())
+ {
+ case KeyEvent.VK_ESCAPE: // escape key
+ mainFrame.dispose();
+ break;
+ case KeyEvent.VK_ENTER: // enter key
+ if (btn_add.isEnabled())
+ {
+ add_ActionPerformed();
+ }
+ break;
+ case KeyEvent.VK_TAB: // tab key
+ if (evt.isShiftDown())
+ {
+ cmb_filterOption.requestFocus();
+ }
+ else
+ {
+ if (btn_add.isEnabled())
+ {
+ btn_add.requestFocus();
+ }
+ else
+ {
+ btn_cancel.requestFocus();
+ }
+ }
+ evt.consume();
+ break;
+ default:
+ return;
+ }
+ }
+ });
+
+ btn_newView = new JButton(
+ MessageManager.formatMessage("action.new_structure_view_with",
+ StructureViewer.getViewerType().toString()));
+ btn_newView.setFont(VERDANA_12);
+ btn_newView.addActionListener(new java.awt.event.ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ newView_ActionPerformed();
+ }
+ });
+ btn_newView.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ if (evt.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ newView_ActionPerformed();
+ }
+ }
+ });
+
+ // TODO: JAL-3898 - get list of available external programs to view
+ // structures with
+
+ btn_add = new JButton(MessageManager.getString("action.add"));
+ btn_add.setFont(VERDANA_12);
+ btn_add.addActionListener(new java.awt.event.ActionListener()
+ {
+ @Override
public void actionPerformed(ActionEvent e)
{
- mainFrame.dispose();
+ add_ActionPerformed();
+ }
+ });
+ btn_add.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ if (evt.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ add_ActionPerformed();
+ }
}
});
- btn_pdbFromFile.setFont(new java.awt.Font("Verdana", 0, 12));
+ btn_pdbFromFile.setFont(VERDANA_12);
String btn_title = MessageManager.getString("label.select_pdb_file");
btn_pdbFromFile.setText(btn_title + " ");
btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
pdbFromFile_actionPerformed();
}
});
+ btn_pdbFromFile.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ if (evt.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ pdbFromFile_actionPerformed();
+ }
+ }
+ });
- scrl_foundStructures.setPreferredSize(new Dimension(500, 300));
- scrl_foundStructures
- .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
-
- cmb_filterOption.setFont(new java.awt.Font("Verdana", 0, 12));
- chk_invertFilter.setFont(new java.awt.Font("Verdana", 0, 12));
- chk_rememberSettings.setFont(new java.awt.Font("Verdana", 0, 12));
+ JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
+ scrl_foundStructures.setPreferredSize(new Dimension(width, height));
+ JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb);
+ scrl_localPDB.setPreferredSize(new Dimension(width, height));
+ scrl_localPDB.setHorizontalScrollBarPolicy(
+ JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
- txt_search.setToolTipText(MessageManager
- .getString("label.enter_pdb_id"));
- cmb_filterOption.setToolTipText(MessageManager
- .getString("info.select_filter_option"));
+ chk_invertFilter.setFont(VERDANA_12);
+ txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true,
+ MessageManager.getString("label.enter_pdb_id_tip")));
txt_search.getDocument().addDocumentListener(new DocumentListener()
{
@Override
public void insertUpdate(DocumentEvent e)
{
- txt_search_ActionPerformed();
+ txt_search_ActionPerformedDelayed();
}
@Override
public void removeUpdate(DocumentEvent e)
{
- txt_search_ActionPerformed();
+ txt_search_ActionPerformedDelayed();
}
@Override
public void changedUpdate(DocumentEvent e)
{
- txt_search_ActionPerformed();
+ txt_search_ActionPerformedDelayed();
}
});
+ cmb_filterOption.setFont(VERDANA_12);
+ cmb_filterOption.setToolTipText(
+ MessageManager.getString("info.select_filter_option"));
cmb_filterOption.addItemListener(this);
- chk_invertFilter.addItemListener(this);
-
- pnl_actions.add(chk_rememberSettings);
- pnl_actions.add(btn_view);
- pnl_actions.add(btn_cancel);
+ // add CustomComboSeparatorsRenderer to filter option combo-box
+ cmb_filterOption.setRenderer(new CustomComboSeparatorsRenderer(
+ (ListCellRenderer<Object>) cmb_filterOption.getRenderer())
+ {
+ @Override
+ protected boolean addSeparatorAfter(JList list, FilterOption value,
+ int index)
+ {
+ return value.isAddSeparatorAfter();
+ }
+ });
- // pnl_filter.add(lbl_result);
- pnl_filter.add(cmb_filterOption);
- pnl_filter.add(lbl_loading);
- pnl_filter.add(chk_invertFilter);
+ chk_invertFilter.addItemListener(this);
+ btn_queryTDB = new JButton(
+ MessageManager.getString("label.search_3dbeacons"));
+ btn_queryTDB.setFont(VERDANA_12);
+ btn_queryTDB.setToolTipText(
+ MessageManager.getString("label.find_models_from_3dbeacons"));
+ btn_queryTDB.setPreferredSize(new Dimension(300, 24));
+ btn_queryTDB.setVisible(false);
+
+ targetView.setVisible(false);
+
+ JPanel actionsPanel = new JPanel(new MigLayout());
+ actionsPanel.add(targetView, "left");
+ actionsPanel.add(btn_add, "wrap");
+ actionsPanel.add(chk_superpose, "left");
+ actionsPanel.add(btn_newView);
+ actionsPanel.add(btn_cancel, "right");
+
+ JPanel pnl_main = new JPanel(new BorderLayout());
+ JPanel pnl_controls = new JPanel();
+ pnl_queryTDB = new JPanel(new FlowLayout());
+ pnl_queryTDB.setBackground(getBackground());
+ pnl_queryTDB.add(new JLabel(tdbImage));
+ pnl_queryTDB.add(btn_queryTDB);
+ pnl_queryTDB.setVisible(false);
+ pnl_main.add(pnl_queryTDB, BorderLayout.NORTH);
+ pnl_controls.add(cmb_filterOption);
+ pnl_controls.add(lbl_loading);
+ pnl_controls.add(chk_invertFilter);
+ pnl_main.add(pnl_controls, BorderLayout.CENTER);
lbl_loading.setVisible(false);
- pnl_idInput.add(txt_search);
- pnl_idInput.add(lbl_pdbManualFetchStatus);
-
+ JPanel pnl_fileChooser = new JPanel(new FlowLayout());
pnl_fileChooser.add(btn_pdbFromFile);
pnl_fileChooser.add(lbl_fromFileStatus);
-
+ JPanel pnl_fileChooserBL = new JPanel(new BorderLayout());
pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH);
pnl_fileChooserBL.add(pnl_fileChooser, BorderLayout.CENTER);
+ JPanel pnl_idInput = new JPanel(new FlowLayout());
+ pnl_idInput.add(txt_search);
+ pnl_idInput.add(lbl_pdbManualFetchStatus);
+
+ JPanel pnl_idInputBL = new JPanel(new BorderLayout());
pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH);
pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER);
-
+
final String foundStructureSummary = MessageManager
.getString("label.found_structures_summary");
-
+ final String configureCols = MessageManager
+ .getString("label.configure_displayed_columns");
ChangeListener changeListener = new ChangeListener()
{
+ @Override
public void stateChanged(ChangeEvent changeEvent)
{
JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent
.getSource();
int index = sourceTabbedPane.getSelectedIndex();
+ btn_add.setVisible(targetView.isVisible());
+ btn_newView.setVisible(true);
+ btn_cancel.setVisible(true);
+ if (sourceTabbedPane.getTitleAt(index).equals(configureCols))
+ {
+ btn_add.setEnabled(false);
+ btn_cancel.setEnabled(false);
+ btn_add.setVisible(false);
+ btn_newView.setEnabled(false);
+ btn_cancel.setVisible(false);
+ previousWantedFields = getFTSDocFieldPrefs()
+ .getStructureSummaryFields()
+ .toArray(new FTSDataColumnI[0]);
+ }
if (sourceTabbedPane.getTitleAt(index)
.equals(foundStructureSummary))
{
- tabRefresh();
+ btn_cancel.setEnabled(true);
+ if (wantedFieldsUpdated())
+ {
+ tabRefresh();
+ }
+ else
+ {
+ validateSelections();
+ }
}
}
};
- tabbedPane.addChangeListener(changeListener);
- tabbedPane.setPreferredSize(new Dimension(500, 300));
- tabbedPane.add(foundStructureSummary, scrl_foundStructures);
- tabbedPane.add(
- MessageManager.getString("label.configure_displayed_columns"),
- pdbDocFieldPrefs);
-
+ pnl_filter.addChangeListener(changeListener);
+ pnl_filter.setPreferredSize(new Dimension(width, height));
+ pnl_filter.add(foundStructureSummary, scrl_foundStructures);
+ pnl_filter.add(configureCols, getFTSDocFieldPrefs());
+
+ JPanel pnl_locPDB = new JPanel(new BorderLayout());
+ pnl_locPDB.add(scrl_localPDB);
pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE);
pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID);
- pnl_switchableViews.add(tabbedPane, VIEWS_FILTER);
-
- this.setLayout(mainLayout);
- this.add(pnl_filter, java.awt.BorderLayout.NORTH);
- this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER);
- this.add(pnl_actions, java.awt.BorderLayout.SOUTH);
+ pnl_switchableViews.add(pnl_filter, VIEWS_FILTER);
+ pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB);
+ this.setLayout(new BorderLayout());
+ this.add(pnl_main, java.awt.BorderLayout.NORTH);
+ this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER);
+ // this.add(pnl_actions, java.awt.BorderLayout.SOUTH);
+ statusPanel.setLayout(new GridLayout());
+
+ JPanel pnl_actionsAndStatus = new JPanel(new BorderLayout());
+ pnl_actionsAndStatus.add(actionsPanel, BorderLayout.CENTER);
+ pnl_actionsAndStatus.add(statusPanel, BorderLayout.SOUTH);
+ statusPanel.add(statusBar, null);
+ this.add(pnl_actionsAndStatus, java.awt.BorderLayout.SOUTH);
+
+ mainFrame.addInternalFrameListener(
+ new javax.swing.event.InternalFrameAdapter()
+ {
+ @Override
+ public void internalFrameClosing(InternalFrameEvent e)
+ {
+ closeAction(pnl_filter.getHeight());
+ }
+ });
mainFrame.setVisible(true);
mainFrame.setContentPane(this);
mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
- Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400);
+ Integer x = tempUserPrefs.get("structureChooser.x");
+ Integer y = tempUserPrefs.get("structureChooser.y");
+ if (x != null && y != null)
+ {
+ mainFrame.setLocation(x, y);
+ }
+ Desktop.addInternalFrame(mainFrame, frameTitle, width, height);
}
-
- @Override
- /**
- * Event listener for the 'filter' combo-box and 'invert' check-box
- */
- public void itemStateChanged(ItemEvent e)
+ protected abstract boolean showPopupFor(int selectedRow, int x, int y);
+
+ protected void closeAction(int preferredHeight)
{
- stateChanged(e);
+ // System.out.println(">>>>>>>>>> closing internal frame!!!");
+ // System.out.println("width : " + mainFrame.getWidth());
+ // System.out.println("heigh : " + mainFrame.getHeight());
+ // System.out.println("x : " + mainFrame.getX());
+ // System.out.println("y : " + mainFrame.getY());
+ tempUserPrefs.put("structureChooser.width", pnl_filter.getWidth());
+ tempUserPrefs.put("structureChooser.height", preferredHeight);
+ tempUserPrefs.put("structureChooser.x", mainFrame.getX());
+ tempUserPrefs.put("structureChooser.y", mainFrame.getY());
+ mainFrame.dispose();
}
- /**
- * This inner class provides the data model for the structure filter combo-box
- *
- * @author tcnofoegbu
- *
- */
- public class FilterOption
+ public boolean wantedFieldsUpdated()
{
- private String name;
-
- private String value;
-
- private String view;
-
- public FilterOption(String name, String value, String view)
- {
- this.name = name;
- this.value = value;
- this.view = view;
- }
-
- public String getName()
+ if (previousWantedFields == null)
{
- return name;
+ return true;
}
- public void setName(String name)
- {
- this.name = name;
- }
+ FTSDataColumnI[] currentWantedFields = getFTSDocFieldPrefs()
+ .getStructureSummaryFields().toArray(new FTSDataColumnI[0]);
+ return Arrays.equals(currentWantedFields, previousWantedFields) ? false
+ : true;
- public String getValue()
- {
- return value;
- }
-
- public void setValue(String value)
- {
- this.value = value;
- }
-
- public String getView()
- {
- return view;
- }
-
- public void setView(String view)
- {
- this.view = view;
- }
+ }
- public String toString()
- {
- return this.name;
- }
+ @Override
+ /**
+ * Event listener for the 'filter' combo-box and 'invert' check-box
+ */
+ public void itemStateChanged(ItemEvent e)
+ {
+ stateChanged(e);
}
/**
public class AssociateSeqOptions
{
private SequenceI sequence;
+
private String name;
public AssociateSeqOptions(SequenceI seq)
{
this.sequence = seq;
- this.name = (seq.getName().length() >= 23) ? seq.getName().substring(
- 0, 23) : seq.getName();
+ this.name = (seq.getName().length() >= 23)
+ ? seq.getName().substring(0, 23)
+ : seq.getName();
}
public AssociateSeqOptions(String name, SequenceI seq)
this.sequence = seq;
}
+ @Override
public String toString()
{
return name;
* @author tcnofoegbu
*
*/
- public class AssciateSeqPanel extends JPanel implements ItemListener
+ public class AssociateSeqPanel extends JPanel implements ItemListener
{
- private JComboBox<AssociateSeqOptions> cmb_assSeq = new JComboBox<AssociateSeqOptions>();
+ private JComboBox<AssociateSeqOptions> cmb_assSeq = new JComboBox<>();
private JLabel lbl_associateSeq = new JLabel();
- public AssciateSeqPanel()
+ public AssociateSeqPanel()
{
this.setLayout(new FlowLayout());
this.add(cmb_assSeq);
this.add(lbl_associateSeq);
- cmb_assSeq.setToolTipText(MessageManager
- .getString("info.associate_wit_sequence"));
+ cmb_assSeq.setToolTipText(
+ MessageManager.getString("info.associate_wit_sequence"));
cmb_assSeq.addItemListener(this);
}
}
}
+ public JTable getResultTable()
+ {
+ return tbl_summary;
+ }
+
public JComboBox<FilterOption> getCmbFilterOption()
{
return cmb_filterOption;
}
- protected abstract void stateChanged(ItemEvent e);
+ /**
+ * Custom ListCellRenderer for adding a separator between different categories
+ * of structure chooser filter option drop-down.
+ *
+ * @author tcnofoegbu
+ *
+ */
+ public abstract class CustomComboSeparatorsRenderer
+ implements ListCellRenderer<Object>
+ {
+ private ListCellRenderer<Object> regent;
- protected abstract void updateCurrentView();
+ private JPanel separatorPanel = new JPanel(new BorderLayout());
- protected abstract void populateFilterComboBox();
+ private JSeparator jSeparator = new JSeparator();
- protected abstract void ok_ActionPerformed();
+ public CustomComboSeparatorsRenderer(
+ ListCellRenderer<Object> listCellRenderer)
+ {
+ this.regent = listCellRenderer;
+ }
+
+ @Override
+ public Component getListCellRendererComponent(JList list, Object value,
+ int index, boolean isSelected, boolean cellHasFocus)
+ {
+
+ Component comp = regent.getListCellRendererComponent(list, value,
+ index, isSelected, cellHasFocus);
+ if (index != -1
+ && addSeparatorAfter(list, (FilterOption) value, index))
+ {
+ separatorPanel.removeAll();
+ separatorPanel.add(comp, BorderLayout.CENTER);
+ separatorPanel.add(jSeparator, BorderLayout.SOUTH);
+ return separatorPanel;
+ }
+ else
+ {
+ return comp;
+ }
+ }
+
+ protected abstract boolean addSeparatorAfter(JList list,
+ FilterOption value, int index);
+ }
+
+ protected abstract void stateChanged(ItemEvent e);
+
+ protected abstract void add_ActionPerformed();
+
+ protected abstract void newView_ActionPerformed();
protected abstract void pdbFromFile_actionPerformed();
protected abstract void txt_search_ActionPerformed();
- public abstract void populateCmbAssociateSeqOptions(
- JComboBox<AssociateSeqOptions> cmb_assSeq, JLabel lbl_associateSeq);
+ protected abstract void populateCmbAssociateSeqOptions(
+ JComboBox<AssociateSeqOptions> cmb_assSeq,
+ JLabel lbl_associateSeq);
+
+ protected abstract void cmbAssSeqStateChanged();
- public abstract void cmbAssSeqStateChanged();
+ protected abstract void tabRefresh();
- public abstract void tabRefresh();
-}
+ protected abstract void validateSelections();
+}
\ No newline at end of file
git://source.jalview.org / jalview.git / blobdiff