JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / jbgui / GStructureViewer.java

diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java
index 7e1be58..ac2202c 100644 (file)
--- a/src/jalview/jbgui/GStructureViewer.java
+++ b/src/jalview/jbgui/GStructureViewer.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,20 +20,74 @@
  */
 package jalview.jbgui;
 
+import jalview.api.structures.JalviewStructureDisplayI;
 import jalview.util.MessageManager;
 
+import java.awt.GridLayout;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 
 import javax.swing.ButtonGroup;
 import javax.swing.JInternalFrame;
+import javax.swing.JLabel;
 import javax.swing.JMenu;
 import javax.swing.JMenuBar;
 import javax.swing.JMenuItem;
+import javax.swing.JPanel;
 import javax.swing.JRadioButtonMenuItem;
 
-public class GStructureViewer extends JInternalFrame
+public abstract class GStructureViewer extends JInternalFrame implements
+        JalviewStructureDisplayI
 {
+  // private AAStructureBindingModel bindingModel;
+
+  protected JMenu savemenu = new JMenu();
+
+  protected JMenu viewMenu = new JMenu();
+
+  protected JMenu chainMenu = new JMenu();
+
+  protected JMenu viewerActionMenu = new JMenu();
+
+  protected JMenuItem alignStructs = new JMenuItem();
+
+  protected JMenuItem fitToWindow = new JMenuItem();
+
+  protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
+
+  protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
+
+  protected JMenuItem helpItem = new JMenuItem();
+
+  protected JLabel statusBar = new JLabel();
+
+  protected JPanel statusPanel = new JPanel();
+
+  /**
+   * Constructor
+   */
   public GStructureViewer()
   {
     try
@@ -47,10 +101,16 @@ public class GStructureViewer extends JInternalFrame
 
   private void jbInit() throws Exception
   {
+    JMenuBar menuBar = new JMenuBar();
     this.setJMenuBar(menuBar);
+
+    JMenu fileMenu = new JMenu();
     fileMenu.setText(MessageManager.getString("action.file"));
+
     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
     savemenu.setText(MessageManager.getString("action.save_as"));
+
+    JMenuItem pdbFile = new JMenuItem();
     pdbFile.setText(MessageManager.getString("label.pdb_file"));
     pdbFile.addActionListener(new ActionListener()
     {
@@ -59,6 +119,8 @@ public class GStructureViewer extends JInternalFrame
         pdbFile_actionPerformed(actionEvent);
       }
     });
+
+    JMenuItem png = new JMenuItem();
     png.setText("PNG");
     png.addActionListener(new ActionListener()
     {
@@ -67,6 +129,8 @@ public class GStructureViewer extends JInternalFrame
         png_actionPerformed(actionEvent);
       }
     });
+
+    JMenuItem eps = new JMenuItem();
     eps.setText("EPS");
     eps.addActionListener(new ActionListener()
     {
@@ -75,6 +139,8 @@ public class GStructureViewer extends JInternalFrame
         eps_actionPerformed(actionEvent);
       }
     });
+
+    JMenuItem viewMapping = new JMenuItem();
     viewMapping.setText(MessageManager.getString("label.view_mapping"));
     viewMapping.addActionListener(new ActionListener()
     {
@@ -84,10 +150,24 @@ public class GStructureViewer extends JInternalFrame
       }
     });
     viewMenu.setText(MessageManager.getString("action.view"));
+
     chainMenu.setText(MessageManager.getString("action.show_chain"));
+
+    fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
+    fitToWindow.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        fitToWindow_actionPerformed();
+      }
+    });
+
+    JMenu colourMenu = new JMenu();
     colourMenu.setText(MessageManager.getString("label.colours"));
-    backGround.setText(MessageManager.getString("label.background_colour")
-            + "...");
+
+    JMenuItem backGround = new JMenuItem();
+    backGround
+            .setText(MessageManager.getString("action.background_colour"));
     backGround.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent actionEvent)
@@ -207,6 +287,8 @@ public class GStructureViewer extends JInternalFrame
         viewerColour_actionPerformed(actionEvent);
       }
     });
+
+    JMenu helpMenu = new JMenu();
     helpMenu.setText(MessageManager.getString("action.help"));
     helpItem.setText(MessageManager.getString("label.jmol_help"));
     helpItem.addActionListener(new ActionListener()
@@ -254,6 +336,8 @@ public class GStructureViewer extends JInternalFrame
     colourMenu.add(viewerColour);
     colourMenu.add(backGround);
 
+    ButtonGroup colourButtons = new ButtonGroup();
+
     colourButtons.add(seqColour);
     colourButtons.add(chainColour);
     colourButtons.add(chargeColour);
@@ -264,11 +348,20 @@ public class GStructureViewer extends JInternalFrame
     colourButtons.add(strandColour);
     colourButtons.add(turnColour);
     colourButtons.add(buriedColour);
+    colourButtons.add(purinePyrimidineColour);
     colourButtons.add(userColour);
     colourButtons.add(viewerColour);
 
     helpMenu.add(helpItem);
     viewerActionMenu.add(alignStructs);
+
+    statusPanel.setLayout(new GridLayout());
+    this.getContentPane().add(statusPanel, java.awt.BorderLayout.SOUTH);
+    statusPanel.add(statusBar, null);
+  }
+
+  protected void fitToWindow_actionPerformed()
+  {
   }
 
   protected void viewerColour_actionPerformed(ActionEvent actionEvent)
@@ -279,66 +372,6 @@ public class GStructureViewer extends JInternalFrame
   {
   }
 
-  JMenuBar menuBar = new JMenuBar();
-
-  JMenu fileMenu = new JMenu();
-
-  JMenu savemenu = new JMenu();
-
-  JMenuItem pdbFile = new JMenuItem();
-
-  JMenuItem png = new JMenuItem();
-
-  JMenuItem eps = new JMenuItem();
-
-  JMenuItem viewMapping = new JMenuItem();
-
-  protected JMenu viewMenu = new JMenu();
-
-  protected JMenu chainMenu = new JMenu();
-
-  JMenu jMenu1 = new JMenu();
-
-  protected JMenu colourMenu = new JMenu();
-
-  protected JMenu viewerActionMenu = new JMenu();
-
-  protected JMenuItem alignStructs = new JMenuItem();
-
-  JMenuItem backGround = new JMenuItem();
-
-  protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
-
-  protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
-
-  protected ButtonGroup colourButtons = new ButtonGroup();
-
-  JMenu helpMenu = new JMenu();
-
-  protected JMenuItem helpItem = new JMenuItem();
-
   public void pdbFile_actionPerformed(ActionEvent actionEvent)
   {
 
@@ -428,4 +461,14 @@ public class GStructureViewer extends JInternalFrame
   {
 
   }
+
+  // {
+  // return bindingModel;
+  // }
+
+  // public void setBindingModel(AAStructureBindingModel bindingModel)
+  // {
+  // this.bindingModel = bindingModel;
+  // }
+
 }