-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-package jalview.jbgui;\r
-\r
-import java.awt.*;\r
-import java.awt.event.*;\r
-\r
-import javax.swing.*;\r
-\r
-\r
-public class GTreePanel extends JInternalFrame {\r
- BorderLayout borderLayout1 = new BorderLayout();\r
- public JScrollPane scrollPane = new JScrollPane();\r
- JMenuBar jMenuBar1 = new JMenuBar();\r
- JMenu jMenu1 = new JMenu();\r
- JMenuItem saveAsNewick = new JMenuItem();\r
- JMenuItem printMenu = new JMenuItem();\r
- JMenu jMenu2 = new JMenu();\r
- public JMenuItem fontSize = new JMenuItem();\r
- public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();\r
- public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();\r
- public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();\r
- public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();\r
- JMenuItem pngTree = new JMenuItem();\r
- JMenuItem epsTree = new JMenuItem();\r
- JMenu saveAsMenu = new JMenu();\r
- JMenuItem textbox = new JMenuItem();\r
-\r
- public GTreePanel() {\r
- try {\r
- jbInit();\r
- this.setJMenuBar(jMenuBar1);\r
- } catch (Exception e) {\r
- e.printStackTrace();\r
- }\r
- }\r
-\r
- private void jbInit() throws Exception {\r
- this.getContentPane().setLayout(borderLayout1);\r
- this.setBackground(Color.white);\r
- this.setFont(new java.awt.Font("Verdana", 0, 12));\r
- scrollPane.setOpaque(false);\r
- jMenu1.setText("File");\r
- saveAsNewick.setText("Newick Format");\r
- saveAsNewick.addActionListener(new ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- saveAsNewick_actionPerformed(e);\r
- }\r
- });\r
- printMenu.setText("Print");\r
- printMenu.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- printMenu_actionPerformed(e);\r
- }\r
- });\r
- jMenu2.setText("View");\r
- fontSize.setText("Font Size - 12");\r
- fontSize.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- fontSize_actionPerformed(e);\r
- }\r
- });\r
- bootstrapMenu.setText("Show Bootstrap Values");\r
- bootstrapMenu.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- bootstrapMenu_actionPerformed(e);\r
- }\r
- });\r
- distanceMenu.setText("Show Distances");\r
- distanceMenu.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- distanceMenu_actionPerformed(e);\r
- }\r
- });\r
- fitToWindow.setSelected(true);\r
- fitToWindow.setText("Fit To Window");\r
- fitToWindow.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- fitToWindow_actionPerformed(e);\r
- }\r
- });\r
- epsTree.setText("EPS");\r
- epsTree.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- epsTree_actionPerformed(e);\r
- }\r
- });\r
- pngTree.setText("PNG");\r
- pngTree.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- pngTree_actionPerformed(e);\r
- }\r
- });\r
- saveAsMenu.setText("Save as");\r
- placeholdersMenu.setToolTipText(\r
- "Marks leaves of tree not associated with a sequence");\r
- placeholdersMenu.setText("Mark Unlinked Leaves");\r
- placeholdersMenu.addActionListener(new ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- placeholdersMenu_actionPerformed(e);\r
- }\r
- });\r
- textbox.setText("Output to Textbox...");\r
- textbox.addActionListener(new ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- textbox_actionPerformed(e);\r
- }\r
- });\r
- this.getContentPane().add(scrollPane, BorderLayout.CENTER);\r
- jMenuBar1.add(jMenu1);\r
- jMenuBar1.add(jMenu2);\r
- jMenu1.add(saveAsMenu);\r
- jMenu1.add(textbox);\r
- jMenu1.add(printMenu);\r
- jMenu2.add(fitToWindow);\r
- jMenu2.add(fontSize);\r
- jMenu2.add(distanceMenu);\r
- jMenu2.add(bootstrapMenu);\r
- jMenu2.add(placeholdersMenu);\r
- saveAsMenu.add(saveAsNewick);\r
- saveAsMenu.add(epsTree);\r
- saveAsMenu.add(pngTree);\r
- }\r
-\r
- public void printMenu_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void fontSize_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void distanceMenu_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void bootstrapMenu_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void fitToWindow_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void pngTree_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void epsTree_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void saveAsNewick_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void placeholdersMenu_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- public void textbox_actionPerformed(ActionEvent e) {\r
- }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.jbgui;
+
+import java.awt.*;
+import java.awt.event.*;
+import javax.swing.*;
+import javax.swing.event.*;
+
+public class GTreePanel extends JInternalFrame
+{
+ BorderLayout borderLayout1 = new BorderLayout();
+
+ public JScrollPane scrollPane = new JScrollPane();
+
+ JMenuBar jMenuBar1 = new JMenuBar();
+
+ JMenu fileMenu = new JMenu();
+
+ JMenuItem saveAsNewick = new JMenuItem();
+
+ JMenuItem printMenu = new JMenuItem();
+
+ protected JMenu viewMenu = new JMenu();
+
+ public JMenuItem font = new JMenuItem();
+
+ public JMenuItem sortAssocViews = new JMenuItem();
+
+ public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
+
+ JMenuItem pngTree = new JMenuItem();
+
+ JMenuItem epsTree = new JMenuItem();
+
+ JMenu saveAsMenu = new JMenu();
+
+ JMenuItem textbox = new JMenuItem();
+
+ public JMenuItem originalSeqData = new JMenuItem();
+
+ protected JMenu associateLeavesMenu = new JMenu();
+
+ public GTreePanel()
+ {
+ try
+ {
+ jbInit();
+ this.setJMenuBar(jMenuBar1);
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ }
+
+ private void jbInit() throws Exception
+ {
+ this.getContentPane().setLayout(borderLayout1);
+ this.setBackground(Color.white);
+ this.setFont(new java.awt.Font("Verdana", 0, 12));
+ scrollPane.setOpaque(false);
+ fileMenu.setText("File");
+ saveAsNewick.setText("Newick Format");
+ saveAsNewick.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ saveAsNewick_actionPerformed(e);
+ }
+ });
+ printMenu.setText("Print");
+ printMenu.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ printMenu_actionPerformed(e);
+ }
+ });
+ viewMenu.setText("View");
+ viewMenu.addMenuListener(new MenuListener()
+ {
+ public void menuSelected(MenuEvent e)
+ {
+ viewMenu_menuSelected();
+ }
+
+ public void menuDeselected(MenuEvent e)
+ {
+ }
+
+ public void menuCanceled(MenuEvent e)
+ {
+ }
+ });
+ sortAssocViews.setText("Sort Alignment By Tree");
+ sortAssocViews.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ sortByTree_actionPerformed(e);
+ }
+ });
+ font.setText("Font...");
+ font.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ font_actionPerformed(e);
+ }
+ });
+ bootstrapMenu.setText("Show Bootstrap Values");
+ bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ bootstrapMenu_actionPerformed(e);
+ }
+ });
+ distanceMenu.setText("Show Distances");
+ distanceMenu.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ distanceMenu_actionPerformed(e);
+ }
+ });
+ fitToWindow.setSelected(true);
+ fitToWindow.setText("Fit To Window");
+ fitToWindow.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ fitToWindow_actionPerformed(e);
+ }
+ });
+ epsTree.setText("EPS");
+ epsTree.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ epsTree_actionPerformed(e);
+ }
+ });
+ pngTree.setText("PNG");
+ pngTree.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ pngTree_actionPerformed(e);
+ }
+ });
+ saveAsMenu.setText("Save as");
+ placeholdersMenu
+ .setToolTipText("Marks leaves of tree not associated with a sequence");
+ placeholdersMenu.setText("Mark Unlinked Leaves");
+ placeholdersMenu.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ placeholdersMenu_actionPerformed(e);
+ }
+ });
+ textbox.setText("Output to Textbox...");
+ textbox.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ textbox_actionPerformed(e);
+ }
+ });
+ originalSeqData.setText("Input Data...");
+ originalSeqData.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ originalSeqData_actionPerformed(e);
+ }
+ });
+ associateLeavesMenu.setText("Associate Leaves With");
+ this.getContentPane().add(scrollPane, BorderLayout.CENTER);
+ jMenuBar1.add(fileMenu);
+ jMenuBar1.add(viewMenu);
+ fileMenu.add(saveAsMenu);
+ fileMenu.add(textbox);
+ fileMenu.add(printMenu);
+ fileMenu.add(originalSeqData);
+ viewMenu.add(fitToWindow);
+ viewMenu.add(font);
+ viewMenu.add(distanceMenu);
+ viewMenu.add(bootstrapMenu);
+ viewMenu.add(placeholdersMenu);
+ viewMenu.add(sortAssocViews);
+ viewMenu.add(associateLeavesMenu);
+ saveAsMenu.add(saveAsNewick);
+ saveAsMenu.add(epsTree);
+ saveAsMenu.add(pngTree);
+ }
+
+ public void printMenu_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void font_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void distanceMenu_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void bootstrapMenu_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void fitToWindow_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void pngTree_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void epsTree_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void saveAsNewick_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void placeholdersMenu_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void textbox_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void fullid_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void originalSeqData_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void viewMenu_menuSelected()
+ {
+ }
+ public void sortByTree_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff