+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
package jalview.jbgui;
import java.awt.*;
-import javax.swing.*;
import java.awt.event.*;
+import javax.swing.*;
+import javax.swing.event.*;
public class GTreePanel extends JInternalFrame
{
BorderLayout borderLayout1 = new BorderLayout();
- protected JScrollPane scrollPane = new JScrollPane();
+
+ public JScrollPane scrollPane = new JScrollPane();
+
JMenuBar jMenuBar1 = new JMenuBar();
- JMenu jMenu1 = new JMenu();
- JMenuItem saveMenu = new JMenuItem();
+
+ JMenu fileMenu = new JMenu();
+
+ JMenuItem saveAsNewick = new JMenuItem();
+
JMenuItem printMenu = new JMenuItem();
- JMenu jMenu2 = new JMenu();
- protected JMenuItem fontSize = new JMenuItem();
- protected JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
- protected JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
- protected JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
+
+ protected JMenu viewMenu = new JMenu();
+
+ public JMenuItem font = new JMenuItem();
+
+ public JMenuItem sortAssocViews = new JMenuItem();
+
+ public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
+
+ public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
+
JMenuItem pngTree = new JMenuItem();
+
JMenuItem epsTree = new JMenuItem();
+ JMenu saveAsMenu = new JMenu();
+
+ JMenuItem textbox = new JMenuItem();
+
+ public JMenuItem originalSeqData = new JMenuItem();
+
+ protected JMenu associateLeavesMenu = new JMenu();
+
public GTreePanel()
{
try
{
jbInit();
this.setJMenuBar(jMenuBar1);
- }
- catch(Exception e)
+ } catch (Exception e)
{
e.printStackTrace();
}
-
}
+
private void jbInit() throws Exception
{
this.getContentPane().setLayout(borderLayout1);
this.setBackground(Color.white);
this.setFont(new java.awt.Font("Verdana", 0, 12));
scrollPane.setOpaque(false);
- jMenu1.setText("File");
- saveMenu.setText("Save");
- saveMenu.addActionListener(new java.awt.event.ActionListener()
+ fileMenu.setText("File");
+ saveAsNewick.setText("Newick Format");
+ saveAsNewick.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
- saveMenu_actionPerformed(e);
+ saveAsNewick_actionPerformed(e);
}
});
printMenu.setText("Print");
printMenu_actionPerformed(e);
}
});
- jMenu2.setText("View");
- fontSize.setText("Font Size - 12");
- fontSize.addActionListener(new java.awt.event.ActionListener()
+ viewMenu.setText("View");
+ viewMenu.addMenuListener(new MenuListener()
+ {
+ public void menuSelected(MenuEvent e)
+ {
+ viewMenu_menuSelected();
+ }
+
+ public void menuDeselected(MenuEvent e)
+ {
+ }
+
+ public void menuCanceled(MenuEvent e)
+ {
+ }
+ });
+ sortAssocViews.setText("Sort Alignment By Tree");
+ sortAssocViews.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
{
- fontSize_actionPerformed(e);
+ sortByTree_actionPerformed(e);
}
});
- bootstrapMenu.setText("Show Bootstrap values");
+ font.setText("Font...");
+ font.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ font_actionPerformed(e);
+ }
+ });
+ bootstrapMenu.setText("Show Bootstrap Values");
bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
fitToWindow.setSelected(true);
- fitToWindow.setText("Fit to window");
+ fitToWindow.setText("Fit To Window");
fitToWindow.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
fitToWindow_actionPerformed(e);
}
});
- epsTree.setText("Save as EPS file");
+ epsTree.setText("EPS");
epsTree.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
epsTree_actionPerformed(e);
}
});
- pngTree.setText("Save as PNG image");
+ pngTree.setText("PNG");
pngTree.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
pngTree_actionPerformed(e);
}
});
+ saveAsMenu.setText("Save as");
+ placeholdersMenu
+ .setToolTipText("Marks leaves of tree not associated with a sequence");
+ placeholdersMenu.setText("Mark Unlinked Leaves");
+ placeholdersMenu.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ placeholdersMenu_actionPerformed(e);
+ }
+ });
+ textbox.setText("Output to Textbox...");
+ textbox.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ textbox_actionPerformed(e);
+ }
+ });
+ originalSeqData.setText("Input Data...");
+ originalSeqData.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ originalSeqData_actionPerformed(e);
+ }
+ });
+ associateLeavesMenu.setText("Associate Leaves With");
this.getContentPane().add(scrollPane, BorderLayout.CENTER);
- jMenuBar1.add(jMenu1);
- jMenuBar1.add(jMenu2);
- jMenu1.add(saveMenu);
- jMenu1.add(epsTree);
- jMenu1.add(pngTree);
- jMenu1.add(printMenu);
- jMenu2.add(fitToWindow);
- jMenu2.add(fontSize);
- jMenu2.add(distanceMenu);
- jMenu2.add(bootstrapMenu);
+ jMenuBar1.add(fileMenu);
+ jMenuBar1.add(viewMenu);
+ fileMenu.add(saveAsMenu);
+ fileMenu.add(textbox);
+ fileMenu.add(printMenu);
+ fileMenu.add(originalSeqData);
+ viewMenu.add(fitToWindow);
+ viewMenu.add(font);
+ viewMenu.add(distanceMenu);
+ viewMenu.add(bootstrapMenu);
+ viewMenu.add(placeholdersMenu);
+ viewMenu.add(sortAssocViews);
+ viewMenu.add(associateLeavesMenu);
+ saveAsMenu.add(saveAsNewick);
+ saveAsMenu.add(epsTree);
+ saveAsMenu.add(pngTree);
}
- protected void saveMenu_actionPerformed(ActionEvent e)
+ public void printMenu_actionPerformed(ActionEvent e)
{
+ }
+ public void font_actionPerformed(ActionEvent e)
+ {
}
- protected void printMenu_actionPerformed(ActionEvent e)
+ public void distanceMenu_actionPerformed(ActionEvent e)
{
+ }
+ public void bootstrapMenu_actionPerformed(ActionEvent e)
+ {
}
- protected void fontSize_actionPerformed(ActionEvent e)
+ public void fitToWindow_actionPerformed(ActionEvent e)
{
+ }
+ public void pngTree_actionPerformed(ActionEvent e)
+ {
}
- protected void distanceMenu_actionPerformed(ActionEvent e)
+ public void epsTree_actionPerformed(ActionEvent e)
{
+ }
+ public void saveAsNewick_actionPerformed(ActionEvent e)
+ {
}
- protected void bootstrapMenu_actionPerformed(ActionEvent e)
+ public void placeholdersMenu_actionPerformed(ActionEvent e)
{
+ }
+ public void textbox_actionPerformed(ActionEvent e)
+ {
}
- protected void fitToWindow_actionPerformed(ActionEvent e)
+ public void fullid_actionPerformed(ActionEvent e)
{
}
- protected void pngTree_actionPerformed(ActionEvent e)
+ public void originalSeqData_actionPerformed(ActionEvent e)
{
}
- protected void epsTree_actionPerformed(ActionEvent e)
+ public void viewMenu_menuSelected()
+ {
+ }
+ public void sortByTree_actionPerformed(ActionEvent e)
{
}
git://source.jalview.org / jalview.git / blobdiff