JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / json / binding / biojson / v1 / AlignmentPojo.java

diff --git a/src/jalview/json/binding/biojson/v1/AlignmentPojo.java b/src/jalview/json/binding/biojson/v1/AlignmentPojo.java
index 9021a73..7b78313 100644 (file)
--- a/src/jalview/json/binding/biojson/v1/AlignmentPojo.java
+++ b/src/jalview/json/binding/biojson/v1/AlignmentPojo.java
@@ -1,6 +1,25 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.json.binding.biojson.v1;
 
-
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
@@ -8,16 +27,20 @@ import java.util.Map;
 
 import com.github.reinert.jjschema.Attributes;
 
-@Attributes(title="BioJSON", description="A specification for the representation and exchange of bioinformatics data")
+@Attributes(
+  title = "BioJSON",
+  description = "A specification for the representation and exchange of bioinformatics data")
 public class AlignmentPojo
 {
-  @Attributes(required = true, description = "Serial version identifier for <b>BioJSON</b> schema")
+  @Attributes(
+    required = true,
+    description = "Serial version identifier for <b>BioJSON</b> schema")
   private String svid = "1.0";
 
   @Attributes(
     required = true,
     minItems = 1,
-           description = "An array of Sequences which makes up the Alignment")
+    description = "An array of Sequences which makes up the Alignment")
   private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
 
   @Attributes(
@@ -48,12 +71,13 @@ public class AlignmentPojo
         "Blosum62", "RNA Helices", "% Identity" },
     description = "The <a href=\"#colourScheme\">Colour Scheme</a> applied to the alignment")
   private String colourScheme;
-  
+
   @Attributes(
-       required = true, 
-       maxItems = 0, description = "AppSettings stores key=value pairs of custom application specific <br>"
-                                         + "settings (i.e visualisation settings, etc) for different applications<br>"
-                                         + "that consume or generate BioJSON")
+    required = true,
+    maxItems = 0,
+    description = "AppSettings stores key=value pairs of custom application specific <br>"
+            + "settings (i.e visualisation settings, etc) for different applications<br>"
+            + "that consume or generate BioJSON")
   Map<String, Object> appSettings = new HashMap<String, Object>();
 
   public AlignmentPojo()