JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / json / binding / biojson / v1 / SequenceGrpPojo.java

diff --git a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
index 7c2a8fd..f64ec92 100644 (file)
--- a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
+++ b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.json.binding.biojson.v1;
 
 import java.util.ArrayList;
@@ -8,37 +28,52 @@ public class SequenceGrpPojo
 {
   @Attributes(
     required = false,
-    description = "The <a href=\"colour_schemes.html\">Colour Scheme</a> applied to the Sequence Group")
+    description = "The <a href=\"#colourScheme\">Colour Scheme</a> applied to the Sequence Group")
   private String colourScheme;
 
-  @Attributes(required = true, description = "The name assigned to the seqGroup")
+  @Attributes(
+    required = true,
+    description = "The name assigned to the seqGroup")
   private String groupName;
 
-  @Attributes(required = false, description = "Serial version identifier for the <b>seqGroup</b> object model")
+  @Attributes(
+    required = false,
+    description = "Serial version identifier for the <b>seqGroup</b> object model")
   private String description;
 
-  @Attributes(required = false, description = "Determines if the seqGroup border should be visible or not")
+  @Attributes(
+    required = false,
+    description = "Determines if the seqGroup border should be visible or not")
   private boolean displayBoxes;
 
-  @Attributes(required = false, description = "Determines if the texts of the group is displayed or not")
+  @Attributes(
+    required = false,
+    description = "Determines if the texts of the group is displayed or not")
   private boolean displayText;
 
-  @Attributes(required = false, description = "Determines if the residues text for the group is coloured")
+  @Attributes(
+    required = false,
+    description = "Determines if the residues text for the group is coloured")
   private boolean colourText;
 
-  @Attributes(required = false, description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
+  @Attributes(
+    required = false,
+    description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
   private boolean showNonconserved;
 
-  @Attributes(required = true, description = "The index of the group’s first residue in the alignment space")
+  @Attributes(
+    required = true,
+    description = "The index of the group’s first residue in the alignment space")
   private int startRes;
 
-  @Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
+  @Attributes(
+    required = true,
+    description = "The index of the group’s last residue in the alignment space")
   private int endRes;
-  
+
   @Attributes(
     required = true,
     minItems = 1,
-    maxItems = 2147483647,
     uniqueItems = true,
     description = "An array of the unique id's for the sequences belonging to the group")
   private ArrayList<String> sequenceRefs = new ArrayList<String>();
@@ -143,5 +178,4 @@ public class SequenceGrpPojo
     this.sequenceRefs = sequenceRefs;
   }
 
-
 }