/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
*/\r
package jalview.schemabinding.version2;\r
\r
-// ---------------------------------/\r
-// - Imported classes and packages -/\r
-// ---------------------------------/\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
\r
import org.exolab.castor.xml.Marshaller;\r
import org.exolab.castor.xml.Unmarshaller;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class AlcodMap implements java.io.Serializable\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * internal jalview id for the dnasq for this mapping.\r
- * \r
- */\r
- private java.lang.String _dnasq;\r
-\r
- /**\r
- * a Mapping entry and an associated protein sequence\r
- * \r
- */\r
- private jalview.schemabinding.version2.Mapping _mapping;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public AlcodMap()\r
- {\r
- super();\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- * Returns the value of field 'dnasq'. The field 'dnasq' has the following\r
- * description: internal jalview id for the dnasq for this mapping.\r
- * \r
- * \r
- * @return the value of field 'Dnasq'.\r
- */\r
- public java.lang.String getDnasq()\r
- {\r
- return this._dnasq;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'mapping'. The field 'mapping' has the following\r
- * description: a Mapping entry and an associated protein sequence\r
- * \r
- * \r
- * @return the value of field 'Mapping'.\r
- */\r
- public jalview.schemabinding.version2.Mapping getMapping()\r
- {\r
- return this._mapping;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
- {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
- return false;\r
+public class AlcodMap implements java.io.Serializable {\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * internal jalview id for the dnasq for this mapping.\r
+ * \r
+ */\r
+ private java.lang.String _dnasq;\r
+\r
+ /**\r
+ * a Mapping entry and an associated protein sequence\r
+ * \r
+ */\r
+ private jalview.schemabinding.version2.Mapping _mapping;\r
+\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public AlcodMap() {\r
+ super();\r
+ }\r
+\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Returns the value of field 'dnasq'. The field 'dnasq' has\r
+ * the following description: internal jalview id for the dnasq\r
+ * for this mapping.\r
+ * \r
+ * \r
+ * @return the value of field 'Dnasq'.\r
+ */\r
+ public java.lang.String getDnasq(\r
+ ) {\r
+ return this._dnasq;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'mapping'. The field 'mapping'\r
+ * has the following description: a Mapping entry and an\r
+ * associated protein sequence\r
+ * \r
+ * \r
+ * @return the value of field 'Mapping'.\r
+ */\r
+ public jalview.schemabinding.version2.Mapping getMapping(\r
+ ) {\r
+ return this._mapping;\r
+ }\r
+\r
+ /**\r
+ * Method isValid.\r
+ * \r
+ * @return true if this object is valid according to the schema\r
+ */\r
+ public boolean isValid(\r
+ ) {\r
+ try {\r
+ validate();\r
+ } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param out\r
+ * @throws org.exolab.castor.xml.MarshalException if object is\r
+ * null or if any SAXException is thrown during marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException if this\r
+ * object is an invalid instance according to the schema\r
+ */\r
+ public void marshal(\r
+ final java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, out);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param handler\r
+ * @throws java.io.IOException if an IOException occurs during\r
+ * marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException if this\r
+ * object is an invalid instance according to the schema\r
+ * @throws org.exolab.castor.xml.MarshalException if object is\r
+ * null or if any SAXException is thrown during marshaling\r
+ */\r
+ public void marshal(\r
+ final org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, handler);\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'dnasq'. The field 'dnasq' has the\r
+ * following description: internal jalview id for the dnasq for\r
+ * this mapping.\r
+ * \r
+ * \r
+ * @param dnasq the value of field 'dnasq'.\r
+ */\r
+ public void setDnasq(\r
+ final java.lang.String dnasq) {\r
+ this._dnasq = dnasq;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'mapping'. The field 'mapping' has\r
+ * the following description: a Mapping entry and an associated\r
+ * protein sequence\r
+ * \r
+ * \r
+ * @param mapping the value of field 'mapping'.\r
+ */\r
+ public void setMapping(\r
+ final jalview.schemabinding.version2.Mapping mapping) {\r
+ this._mapping = mapping;\r
+ }\r
+\r
+ /**\r
+ * Method unmarshal.\r
+ * \r
+ * @param reader\r
+ * @throws org.exolab.castor.xml.MarshalException if object is\r
+ * null or if any SAXException is thrown during marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException if this\r
+ * object is an invalid instance according to the schema\r
+ * @return the unmarshaled\r
+ * jalview.schemabinding.version2.AlcodMap\r
+ */\r
+ public static jalview.schemabinding.version2.AlcodMap unmarshal(\r
+ final java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
+ return (jalview.schemabinding.version2.AlcodMap) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodMap.class, reader);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @throws org.exolab.castor.xml.ValidationException if this\r
+ * object is an invalid instance according to the schema\r
+ */\r
+ public void validate(\r
+ )\r
+ throws org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
}\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- */\r
- public void marshal(final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException\r
- * if an IOException occurs during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- */\r
- public void marshal(final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException,\r
- org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'dnasq'. The field 'dnasq' has the following\r
- * description: internal jalview id for the dnasq for this mapping.\r
- * \r
- * \r
- * @param dnasq\r
- * the value of field 'dnasq'.\r
- */\r
- public void setDnasq(final java.lang.String dnasq)\r
- {\r
- this._dnasq = dnasq;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'mapping'. The field 'mapping' has the following\r
- * description: a Mapping entry and an associated protein sequence\r
- * \r
- * \r
- * @param mapping\r
- * the value of field 'mapping'.\r
- */\r
- public void setMapping(\r
- final jalview.schemabinding.version2.Mapping mapping)\r
- {\r
- this._mapping = mapping;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- * @return the unmarshaled jalview.schemabinding.version2.AlcodMap\r
- */\r
- public static jalview.schemabinding.version2.AlcodMap unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.AlcodMap) Unmarshaller\r
- .unmarshal(jalview.schemabinding.version2.AlcodMap.class,\r
- reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- */\r
- public void validate() throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff