-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
+ *
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-
package jalview.schemabinding.version2;
- //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
*
* @version $Revision$ $Date$
*/
-public class AlcodonFrame implements java.io.Serializable {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field _alcodonList.
- */
- private java.util.Vector _alcodonList;
-
- /**
- * Field _alcodMapList.
- */
- private java.util.Vector _alcodMapList;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public AlcodonFrame() {
- super();
- this._alcodonList = new java.util.Vector();
- this._alcodMapList = new java.util.Vector();
- }
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- *
- *
- * @param vAlcodMap
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addAlcodMap(
- final jalview.schemabinding.version2.AlcodMap vAlcodMap)
- throws java.lang.IndexOutOfBoundsException {
- this._alcodMapList.addElement(vAlcodMap);
- }
-
- /**
- *
- *
- * @param index
- * @param vAlcodMap
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addAlcodMap(
- final int index,
- final jalview.schemabinding.version2.AlcodMap vAlcodMap)
- throws java.lang.IndexOutOfBoundsException {
- this._alcodMapList.add(index, vAlcodMap);
- }
-
- /**
- *
- *
- * @param vAlcodon
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addAlcodon(
- final jalview.schemabinding.version2.Alcodon vAlcodon)
- throws java.lang.IndexOutOfBoundsException {
- this._alcodonList.addElement(vAlcodon);
- }
-
- /**
- *
- *
- * @param index
- * @param vAlcodon
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addAlcodon(
- final int index,
- final jalview.schemabinding.version2.Alcodon vAlcodon)
- throws java.lang.IndexOutOfBoundsException {
- this._alcodonList.add(index, vAlcodon);
- }
-
- /**
- * Method enumerateAlcodMap.
- *
- * @return an Enumeration over all
- * jalview.schemabinding.version2.AlcodMap elements
- */
- public java.util.Enumeration enumerateAlcodMap(
- ) {
- return this._alcodMapList.elements();
- }
-
- /**
- * Method enumerateAlcodon.
- *
- * @return an Enumeration over all
- * jalview.schemabinding.version2.Alcodon elements
- */
- public java.util.Enumeration enumerateAlcodon(
- ) {
- return this._alcodonList.elements();
- }
-
- /**
- * Method getAlcodMap.
- *
- * @param index
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- * @return the value of the
- * jalview.schemabinding.version2.AlcodMap at the given index
- */
- public jalview.schemabinding.version2.AlcodMap getAlcodMap(
- final int index)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._alcodMapList.size()) {
- throw new IndexOutOfBoundsException("getAlcodMap: Index value '" + index + "' not in range [0.." + (this._alcodMapList.size() - 1) + "]");
- }
-
- return (jalview.schemabinding.version2.AlcodMap) _alcodMapList.get(index);
- }
-
- /**
- * Method getAlcodMap.Returns the contents of the collection in
- * an Array. <p>Note: Just in case the collection contents
- * are changing in another thread, we pass a 0-length Array of
- * the correct type into the API call. This way we <i>know</i>
- * that the Array returned is of exactly the correct length.
- *
- * @return this collection as an Array
- */
- public jalview.schemabinding.version2.AlcodMap[] getAlcodMap(
- ) {
- jalview.schemabinding.version2.AlcodMap[] array = new jalview.schemabinding.version2.AlcodMap[0];
- return (jalview.schemabinding.version2.AlcodMap[]) this._alcodMapList.toArray(array);
- }
-
- /**
- * Method getAlcodMapCount.
- *
- * @return the size of this collection
- */
- public int getAlcodMapCount(
- ) {
- return this._alcodMapList.size();
- }
-
- /**
- * Method getAlcodon.
- *
- * @param index
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- * @return the value of the
- * jalview.schemabinding.version2.Alcodon at the given index
- */
- public jalview.schemabinding.version2.Alcodon getAlcodon(
- final int index)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._alcodonList.size()) {
- throw new IndexOutOfBoundsException("getAlcodon: Index value '" + index + "' not in range [0.." + (this._alcodonList.size() - 1) + "]");
- }
-
- return (jalview.schemabinding.version2.Alcodon) _alcodonList.get(index);
- }
-
- /**
- * Method getAlcodon.Returns the contents of the collection in
- * an Array. <p>Note: Just in case the collection contents
- * are changing in another thread, we pass a 0-length Array of
- * the correct type into the API call. This way we <i>know</i>
- * that the Array returned is of exactly the correct length.
- *
- * @return this collection as an Array
- */
- public jalview.schemabinding.version2.Alcodon[] getAlcodon(
- ) {
- jalview.schemabinding.version2.Alcodon[] array = new jalview.schemabinding.version2.Alcodon[0];
- return (jalview.schemabinding.version2.Alcodon[]) this._alcodonList.toArray(array);
- }
-
- /**
- * Method getAlcodonCount.
- *
- * @return the size of this collection
- */
- public int getAlcodonCount(
- ) {
- return this._alcodonList.size();
+public class AlcodonFrame implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _alcodonList.
+ */
+ private java.util.Vector _alcodonList;
+
+ /**
+ * Field _alcodMapList.
+ */
+ private java.util.Vector _alcodMapList;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public AlcodonFrame()
+ {
+ super();
+ this._alcodonList = new java.util.Vector();
+ this._alcodMapList = new java.util.Vector();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ *
+ *
+ * @param vAlcodMap
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addAlcodMap(
+ final jalview.schemabinding.version2.AlcodMap vAlcodMap)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._alcodMapList.addElement(vAlcodMap);
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vAlcodMap
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addAlcodMap(final int index,
+ final jalview.schemabinding.version2.AlcodMap vAlcodMap)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._alcodMapList.add(index, vAlcodMap);
+ }
+
+ /**
+ *
+ *
+ * @param vAlcodon
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addAlcodon(
+ final jalview.schemabinding.version2.Alcodon vAlcodon)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._alcodonList.addElement(vAlcodon);
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vAlcodon
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addAlcodon(final int index,
+ final jalview.schemabinding.version2.Alcodon vAlcodon)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._alcodonList.add(index, vAlcodon);
+ }
+
+ /**
+ * Method enumerateAlcodMap.
+ *
+ * @return an Enumeration over all jalview.schemabinding.version2.AlcodMap
+ * elements
+ */
+ public java.util.Enumeration enumerateAlcodMap()
+ {
+ return this._alcodMapList.elements();
+ }
+
+ /**
+ * Method enumerateAlcodon.
+ *
+ * @return an Enumeration over all jalview.schemabinding.version2.Alcodon
+ * elements
+ */
+ public java.util.Enumeration enumerateAlcodon()
+ {
+ return this._alcodonList.elements();
+ }
+
+ /**
+ * Method getAlcodMap.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the jalview.schemabinding.version2.AlcodMap at the
+ * given index
+ */
+ public jalview.schemabinding.version2.AlcodMap getAlcodMap(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._alcodMapList.size())
+ {
+ throw new IndexOutOfBoundsException("getAlcodMap: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodMapList.size() - 1) + "]");
}
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid(
- ) {
- try {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
+ return (jalview.schemabinding.version2.AlcodMap) _alcodMapList
+ .get(index);
+ }
+
+ /**
+ * Method getAlcodMap.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public jalview.schemabinding.version2.AlcodMap[] getAlcodMap()
+ {
+ jalview.schemabinding.version2.AlcodMap[] array = new jalview.schemabinding.version2.AlcodMap[0];
+ return (jalview.schemabinding.version2.AlcodMap[]) this._alcodMapList
+ .toArray(array);
+ }
+
+ /**
+ * Method getAlcodMapCount.
+ *
+ * @return the size of this collection
+ */
+ public int getAlcodMapCount()
+ {
+ return this._alcodMapList.size();
+ }
+
+ /**
+ * Method getAlcodon.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the jalview.schemabinding.version2.Alcodon at the
+ * given index
+ */
+ public jalview.schemabinding.version2.Alcodon getAlcodon(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._alcodonList.size())
+ {
+ throw new IndexOutOfBoundsException("getAlcodon: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodonList.size() - 1) + "]");
}
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void marshal(
- final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, out);
+ return (jalview.schemabinding.version2.Alcodon) _alcodonList.get(index);
+ }
+
+ /**
+ * Method getAlcodon.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public jalview.schemabinding.version2.Alcodon[] getAlcodon()
+ {
+ jalview.schemabinding.version2.Alcodon[] array = new jalview.schemabinding.version2.Alcodon[0];
+ return (jalview.schemabinding.version2.Alcodon[]) this._alcodonList
+ .toArray(array);
+ }
+
+ /**
+ * Method getAlcodonCount.
+ *
+ * @return the size of this collection
+ */
+ public int getAlcodonCount()
+ {
+ return this._alcodonList.size();
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
}
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException if an IOException occurs during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Method removeAlcodMap.
+ *
+ * @param vAlcodMap
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeAlcodMap(
+ final jalview.schemabinding.version2.AlcodMap vAlcodMap)
+ {
+ boolean removed = _alcodMapList.remove(vAlcodMap);
+ return removed;
+ }
+
+ /**
+ * Method removeAlcodMapAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public jalview.schemabinding.version2.AlcodMap removeAlcodMapAt(
+ final int index)
+ {
+ java.lang.Object obj = this._alcodMapList.remove(index);
+ return (jalview.schemabinding.version2.AlcodMap) obj;
+ }
+
+ /**
+ * Method removeAlcodon.
+ *
+ * @param vAlcodon
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeAlcodon(
+ final jalview.schemabinding.version2.Alcodon vAlcodon)
+ {
+ boolean removed = _alcodonList.remove(vAlcodon);
+ return removed;
+ }
+
+ /**
+ * Method removeAlcodonAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public jalview.schemabinding.version2.Alcodon removeAlcodonAt(
+ final int index)
+ {
+ java.lang.Object obj = this._alcodonList.remove(index);
+ return (jalview.schemabinding.version2.Alcodon) obj;
+ }
+
+ /**
*/
- public void marshal(
- final org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, handler);
- }
+ public void removeAllAlcodMap()
+ {
+ this._alcodMapList.clear();
+ }
- /**
- * Method removeAlcodMap.
- *
- * @param vAlcodMap
- * @return true if the object was removed from the collection.
+ /**
*/
- public boolean removeAlcodMap(
- final jalview.schemabinding.version2.AlcodMap vAlcodMap) {
- boolean removed = _alcodMapList.remove(vAlcodMap);
- return removed;
+ public void removeAllAlcodon()
+ {
+ this._alcodonList.clear();
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vAlcodMap
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setAlcodMap(final int index,
+ final jalview.schemabinding.version2.AlcodMap vAlcodMap)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._alcodMapList.size())
+ {
+ throw new IndexOutOfBoundsException("setAlcodMap: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodMapList.size() - 1) + "]");
}
- /**
- * Method removeAlcodMapAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.AlcodMap removeAlcodMapAt(
- final int index) {
- java.lang.Object obj = this._alcodMapList.remove(index);
- return (jalview.schemabinding.version2.AlcodMap) obj;
+ this._alcodMapList.set(index, vAlcodMap);
+ }
+
+ /**
+ *
+ *
+ * @param vAlcodMapArray
+ */
+ public void setAlcodMap(
+ final jalview.schemabinding.version2.AlcodMap[] vAlcodMapArray)
+ {
+ // -- copy array
+ _alcodMapList.clear();
+
+ for (int i = 0; i < vAlcodMapArray.length; i++)
+ {
+ this._alcodMapList.add(vAlcodMapArray[i]);
}
-
- /**
- * Method removeAlcodon.
- *
- * @param vAlcodon
- * @return true if the object was removed from the collection.
- */
- public boolean removeAlcodon(
- final jalview.schemabinding.version2.Alcodon vAlcodon) {
- boolean removed = _alcodonList.remove(vAlcodon);
- return removed;
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vAlcodon
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setAlcodon(final int index,
+ final jalview.schemabinding.version2.Alcodon vAlcodon)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._alcodonList.size())
+ {
+ throw new IndexOutOfBoundsException("setAlcodon: Index value '"
+ + index + "' not in range [0.."
+ + (this._alcodonList.size() - 1) + "]");
}
- /**
- * Method removeAlcodonAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.Alcodon removeAlcodonAt(
- final int index) {
- java.lang.Object obj = this._alcodonList.remove(index);
- return (jalview.schemabinding.version2.Alcodon) obj;
- }
-
- /**
- */
- public void removeAllAlcodMap(
- ) {
- this._alcodMapList.clear();
- }
-
- /**
- */
- public void removeAllAlcodon(
- ) {
- this._alcodonList.clear();
- }
-
- /**
- *
- *
- * @param index
- * @param vAlcodMap
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void setAlcodMap(
- final int index,
- final jalview.schemabinding.version2.AlcodMap vAlcodMap)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._alcodMapList.size()) {
- throw new IndexOutOfBoundsException("setAlcodMap: Index value '" + index + "' not in range [0.." + (this._alcodMapList.size() - 1) + "]");
- }
-
- this._alcodMapList.set(index, vAlcodMap);
- }
-
- /**
- *
- *
- * @param vAlcodMapArray
- */
- public void setAlcodMap(
- final jalview.schemabinding.version2.AlcodMap[] vAlcodMapArray) {
- //-- copy array
- _alcodMapList.clear();
-
- for (int i = 0; i < vAlcodMapArray.length; i++) {
- this._alcodMapList.add(vAlcodMapArray[i]);
- }
- }
-
- /**
- *
- *
- * @param index
- * @param vAlcodon
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void setAlcodon(
- final int index,
- final jalview.schemabinding.version2.Alcodon vAlcodon)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._alcodonList.size()) {
- throw new IndexOutOfBoundsException("setAlcodon: Index value '" + index + "' not in range [0.." + (this._alcodonList.size() - 1) + "]");
- }
-
- this._alcodonList.set(index, vAlcodon);
- }
-
- /**
- *
- *
- * @param vAlcodonArray
- */
- public void setAlcodon(
- final jalview.schemabinding.version2.Alcodon[] vAlcodonArray) {
- //-- copy array
- _alcodonList.clear();
-
- for (int i = 0; i < vAlcodonArray.length; i++) {
- this._alcodonList.add(vAlcodonArray[i]);
- }
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @return the unmarshaled
- * jalview.schemabinding.version2.AlcodonFrame
- */
- public static jalview.schemabinding.version2.AlcodonFrame unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- return (jalview.schemabinding.version2.AlcodonFrame) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodonFrame.class, reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void validate(
- )
- throws org.exolab.castor.xml.ValidationException {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
+ this._alcodonList.set(index, vAlcodon);
+ }
+
+ /**
+ *
+ *
+ * @param vAlcodonArray
+ */
+ public void setAlcodon(
+ final jalview.schemabinding.version2.Alcodon[] vAlcodonArray)
+ {
+ // -- copy array
+ _alcodonList.clear();
+
+ for (int i = 0; i < vAlcodonArray.length; i++)
+ {
+ this._alcodonList.add(vAlcodonArray[i]);
}
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.AlcodonFrame
+ */
+ public static jalview.schemabinding.version2.AlcodonFrame unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.AlcodonFrame) Unmarshaller
+ .unmarshal(jalview.schemabinding.version2.AlcodonFrame.class,
+ reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
}
git://source.jalview.org / jalview.git / blobdiff