JAL-1764 add structure view type attribute to project schema
[jalview.git] / src / jalview / schemabinding / version2 / FeatureSettings.java
old mode 100755 (executable)
new mode 100644 (file)
index 2dad54a..19c567c
-/*\r
- * This class was automatically generated with\r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.util.*;\r
-\r
-import org.exolab.castor.xml.*;\r
-\r
-/**\r
- * Class FeatureSettings.\r
- *\r
- * @version $Revision$ $Date$\r
- */\r
-public class FeatureSettings\r
-    implements java.io.Serializable\r
-{\r
-\r
-  //--------------------------/\r
-  //- Class/Member Variables -/\r
-  //--------------------------/\r
-\r
-  /**\r
-   * Field _settingList\r
-   */\r
-  private java.util.Vector _settingList;\r
-\r
-  //----------------/\r
-  //- Constructors -/\r
-  //----------------/\r
-\r
-  public FeatureSettings()\r
-  {\r
-    super();\r
-    _settingList = new Vector();\r
-  } //-- jalview.schemabinding.version2.FeatureSettings()\r
-\r
-  //-----------/\r
-  //- Methods -/\r
-  //-----------/\r
-\r
-  /**\r
-   * Method addSetting\r
-   *\r
-   *\r
-   *\r
-   * @param vSetting\r
-   */\r
-  public void addSetting(jalview.schemabinding.version2.Setting vSetting)\r
-      throws java.lang.IndexOutOfBoundsException\r
-  {\r
-    _settingList.addElement(vSetting);\r
-  } //-- void addSetting(jalview.schemabinding.version2.Setting)\r
-\r
-  /**\r
-   * Method addSetting\r
-   *\r
-   *\r
-   *\r
-   * @param index\r
-   * @param vSetting\r
-   */\r
-  public void addSetting(int index,\r
-                         jalview.schemabinding.version2.Setting vSetting)\r
-      throws java.lang.IndexOutOfBoundsException\r
-  {\r
-    _settingList.insertElementAt(vSetting, index);\r
-  } //-- void addSetting(int, jalview.schemabinding.version2.Setting)\r
-\r
-  /**\r
-   * Method enumerateSetting\r
-   *\r
-   *\r
-   *\r
-   * @return Enumeration\r
-   */\r
-  public java.util.Enumeration enumerateSetting()\r
-  {\r
-    return _settingList.elements();\r
-  } //-- java.util.Enumeration enumerateSetting()\r
-\r
-  /**\r
-   * Method getSetting\r
-   *\r
-   *\r
-   *\r
-   * @param index\r
-   * @return Setting\r
-   */\r
-  public jalview.schemabinding.version2.Setting getSetting(int index)\r
-      throws java.lang.IndexOutOfBoundsException\r
-  {\r
-    //-- check bounds for index\r
-    if ( (index < 0) || (index > _settingList.size()))\r
-    {\r
-      throw new IndexOutOfBoundsException();\r
-    }\r
-\r
-    return (jalview.schemabinding.version2.Setting) _settingList.elementAt(\r
-        index);\r
-  } //-- jalview.schemabinding.version2.Setting getSetting(int)\r
-\r
-  /**\r
-   * Method getSetting\r
-   *\r
-   *\r
-   *\r
-   * @return Setting\r
-   */\r
-  public jalview.schemabinding.version2.Setting[] getSetting()\r
-  {\r
-    int size = _settingList.size();\r
-    jalview.schemabinding.version2.Setting[] mArray = new jalview.schemabinding.\r
-        version2.Setting[size];\r
-    for (int index = 0; index < size; index++)\r
-    {\r
-      mArray[index] = (jalview.schemabinding.version2.Setting) _settingList.\r
-          elementAt(index);\r
-    }\r
-    return mArray;\r
-  } //-- jalview.schemabinding.version2.Setting[] getSetting()\r
-\r
-  /**\r
-   * Method getSettingCount\r
-   *\r
-   *\r
-   *\r
-   * @return int\r
-   */\r
-  public int getSettingCount()\r
-  {\r
-    return _settingList.size();\r
-  } //-- int getSettingCount()\r
-\r
-  /**\r
-   * Method isValid\r
-   *\r
-   *\r
-   *\r
-   * @return boolean\r
-   */\r
-  public boolean isValid()\r
-  {\r
-    try\r
-    {\r
-      validate();\r
-    }\r
-    catch (org.exolab.castor.xml.ValidationException vex)\r
-    {\r
-      return false;\r
-    }\r
-    return true;\r
-  } //-- boolean isValid()\r
-\r
-  /**\r
-   * Method marshal\r
-   *\r
-   *\r
-   *\r
-   * @param out\r
-   */\r
-  public void marshal(java.io.Writer out)\r
-      throws org.exolab.castor.xml.MarshalException,\r
-      org.exolab.castor.xml.ValidationException\r
-  {\r
-\r
-    Marshaller.marshal(this, out);\r
-  } //-- void marshal(java.io.Writer)\r
-\r
-  /**\r
-   * Method marshal\r
-   *\r
-   *\r
-   *\r
-   * @param handler\r
-   */\r
-  public void marshal(org.xml.sax.ContentHandler handler)\r
-      throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
-      org.exolab.castor.xml.ValidationException\r
-  {\r
-\r
-    Marshaller.marshal(this, handler);\r
-  } //-- void marshal(org.xml.sax.ContentHandler)\r
-\r
-  /**\r
-   * Method removeAllSetting\r
-   *\r
-   */\r
-  public void removeAllSetting()\r
-  {\r
-    _settingList.removeAllElements();\r
-  } //-- void removeAllSetting()\r
-\r
-  /**\r
-   * Method removeSetting\r
-   *\r
-   *\r
-   *\r
-   * @param index\r
-   * @return Setting\r
-   */\r
-  public jalview.schemabinding.version2.Setting removeSetting(int index)\r
-  {\r
-    java.lang.Object obj = _settingList.elementAt(index);\r
-    _settingList.removeElementAt(index);\r
-    return (jalview.schemabinding.version2.Setting) obj;\r
-  } //-- jalview.schemabinding.version2.Setting removeSetting(int)\r
-\r
-  /**\r
-   * Method setSetting\r
-   *\r
-   *\r
-   *\r
-   * @param index\r
-   * @param vSetting\r
-   */\r
-  public void setSetting(int index,\r
-                         jalview.schemabinding.version2.Setting vSetting)\r
-      throws java.lang.IndexOutOfBoundsException\r
-  {\r
-    //-- check bounds for index\r
-    if ( (index < 0) || (index > _settingList.size()))\r
-    {\r
-      throw new IndexOutOfBoundsException();\r
-    }\r
-    _settingList.setElementAt(vSetting, index);\r
-  } //-- void setSetting(int, jalview.schemabinding.version2.Setting)\r
-\r
-  /**\r
-   * Method setSetting\r
-   *\r
-   *\r
-   *\r
-   * @param settingArray\r
-   */\r
-  public void setSetting(jalview.schemabinding.version2.Setting[] settingArray)\r
-  {\r
-    //-- copy array\r
-    _settingList.removeAllElements();\r
-    for (int i = 0; i < settingArray.length; i++)\r
-    {\r
-      _settingList.addElement(settingArray[i]);\r
-    }\r
-  } //-- void setSetting(jalview.schemabinding.version2.Setting)\r
-\r
-  /**\r
-   * Method unmarshal\r
-   *\r
-   *\r
-   *\r
-   * @param reader\r
-   * @return Object\r
-   */\r
-  public static java.lang.Object unmarshal(java.io.Reader reader)\r
-      throws org.exolab.castor.xml.MarshalException,\r
-      org.exolab.castor.xml.ValidationException\r
-  {\r
-    return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller.\r
-        unmarshal(jalview.schemabinding.version2.FeatureSettings.class, reader);\r
-  } //-- java.lang.Object unmarshal(java.io.Reader)\r
-\r
-  /**\r
-   * Method validate\r
-   *\r
-   */\r
-  public void validate()\r
-      throws org.exolab.castor.xml.ValidationException\r
-  {\r
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
-        Validator();\r
-    validator.validate(this);\r
-  } //-- void validate()\r
-\r
-}\r
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class FeatureSettings.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class FeatureSettings implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _settingList.
+     */
+    private java.util.Vector _settingList;
+
+    /**
+     * Field _groupList.
+     */
+    private java.util.Vector _groupList;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public FeatureSettings() {
+        super();
+        this._settingList = new java.util.Vector();
+        this._groupList = new java.util.Vector();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * 
+     * 
+     * @param vGroup
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addGroup(
+            final jalview.schemabinding.version2.Group vGroup)
+    throws java.lang.IndexOutOfBoundsException {
+        this._groupList.addElement(vGroup);
+    }
+
+    /**
+     * 
+     * 
+     * @param index
+     * @param vGroup
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addGroup(
+            final int index,
+            final jalview.schemabinding.version2.Group vGroup)
+    throws java.lang.IndexOutOfBoundsException {
+        this._groupList.add(index, vGroup);
+    }
+
+    /**
+     * 
+     * 
+     * @param vSetting
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addSetting(
+            final jalview.schemabinding.version2.Setting vSetting)
+    throws java.lang.IndexOutOfBoundsException {
+        this._settingList.addElement(vSetting);
+    }
+
+    /**
+     * 
+     * 
+     * @param index
+     * @param vSetting
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addSetting(
+            final int index,
+            final jalview.schemabinding.version2.Setting vSetting)
+    throws java.lang.IndexOutOfBoundsException {
+        this._settingList.add(index, vSetting);
+    }
+
+    /**
+     * Method enumerateGroup.
+     * 
+     * @return an Enumeration over all
+     * jalview.schemabinding.version2.Group elements
+     */
+    public java.util.Enumeration enumerateGroup(
+    ) {
+        return this._groupList.elements();
+    }
+
+    /**
+     * Method enumerateSetting.
+     * 
+     * @return an Enumeration over all
+     * jalview.schemabinding.version2.Setting elements
+     */
+    public java.util.Enumeration enumerateSetting(
+    ) {
+        return this._settingList.elements();
+    }
+
+    /**
+     * Method getGroup.
+     * 
+     * @param index
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     * @return the value of the
+     * jalview.schemabinding.version2.Group at the given index
+     */
+    public jalview.schemabinding.version2.Group getGroup(
+            final int index)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._groupList.size()) {
+            throw new IndexOutOfBoundsException("getGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]");
+        }
+        
+        return (jalview.schemabinding.version2.Group) _groupList.get(index);
+    }
+
+    /**
+     * Method getGroup.Returns the contents of the collection in an
+     * Array.  <p>Note:  Just in case the collection contents are
+     * changing in another thread, we pass a 0-length Array of the
+     * correct type into the API call.  This way we <i>know</i>
+     * that the Array returned is of exactly the correct length.
+     * 
+     * @return this collection as an Array
+     */
+    public jalview.schemabinding.version2.Group[] getGroup(
+    ) {
+        jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0];
+        return (jalview.schemabinding.version2.Group[]) this._groupList.toArray(array);
+    }
+
+    /**
+     * Method getGroupCount.
+     * 
+     * @return the size of this collection
+     */
+    public int getGroupCount(
+    ) {
+        return this._groupList.size();
+    }
+
+    /**
+     * Method getSetting.
+     * 
+     * @param index
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     * @return the value of the
+     * jalview.schemabinding.version2.Setting at the given index
+     */
+    public jalview.schemabinding.version2.Setting getSetting(
+            final int index)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._settingList.size()) {
+            throw new IndexOutOfBoundsException("getSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]");
+        }
+        
+        return (jalview.schemabinding.version2.Setting) _settingList.get(index);
+    }
+
+    /**
+     * Method getSetting.Returns the contents of the collection in
+     * an Array.  <p>Note:  Just in case the collection contents
+     * are changing in another thread, we pass a 0-length Array of
+     * the correct type into the API call.  This way we <i>know</i>
+     * that the Array returned is of exactly the correct length.
+     * 
+     * @return this collection as an Array
+     */
+    public jalview.schemabinding.version2.Setting[] getSetting(
+    ) {
+        jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0];
+        return (jalview.schemabinding.version2.Setting[]) this._settingList.toArray(array);
+    }
+
+    /**
+     * Method getSettingCount.
+     * 
+     * @return the size of this collection
+     */
+    public int getSettingCount(
+    ) {
+        return this._settingList.size();
+    }
+
+    /**
+     * Method isValid.
+     * 
+     * @return true if this object is valid according to the schema
+     */
+    public boolean isValid(
+    ) {
+        try {
+            validate();
+        } catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    }
+
+    /**
+     * 
+     * 
+     * @param out
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void marshal(
+            final java.io.Writer out)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, out);
+    }
+
+    /**
+     * 
+     * 
+     * @param handler
+     * @throws java.io.IOException if an IOException occurs during
+     * marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     */
+    public void marshal(
+            final org.xml.sax.ContentHandler handler)
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, handler);
+    }
+
+    /**
+     */
+    public void removeAllGroup(
+    ) {
+        this._groupList.clear();
+    }
+
+    /**
+     */
+    public void removeAllSetting(
+    ) {
+        this._settingList.clear();
+    }
+
+    /**
+     * Method removeGroup.
+     * 
+     * @param vGroup
+     * @return true if the object was removed from the collection.
+     */
+    public boolean removeGroup(
+            final jalview.schemabinding.version2.Group vGroup) {
+        boolean removed = _groupList.remove(vGroup);
+        return removed;
+    }
+
+    /**
+     * Method removeGroupAt.
+     * 
+     * @param index
+     * @return the element removed from the collection
+     */
+    public jalview.schemabinding.version2.Group removeGroupAt(
+            final int index) {
+        java.lang.Object obj = this._groupList.remove(index);
+        return (jalview.schemabinding.version2.Group) obj;
+    }
+
+    /**
+     * Method removeSetting.
+     * 
+     * @param vSetting
+     * @return true if the object was removed from the collection.
+     */
+    public boolean removeSetting(
+            final jalview.schemabinding.version2.Setting vSetting) {
+        boolean removed = _settingList.remove(vSetting);
+        return removed;
+    }
+
+    /**
+     * Method removeSettingAt.
+     * 
+     * @param index
+     * @return the element removed from the collection
+     */
+    public jalview.schemabinding.version2.Setting removeSettingAt(
+            final int index) {
+        java.lang.Object obj = this._settingList.remove(index);
+        return (jalview.schemabinding.version2.Setting) obj;
+    }
+
+    /**
+     * 
+     * 
+     * @param index
+     * @param vGroup
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void setGroup(
+            final int index,
+            final jalview.schemabinding.version2.Group vGroup)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._groupList.size()) {
+            throw new IndexOutOfBoundsException("setGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]");
+        }
+        
+        this._groupList.set(index, vGroup);
+    }
+
+    /**
+     * 
+     * 
+     * @param vGroupArray
+     */
+    public void setGroup(
+            final jalview.schemabinding.version2.Group[] vGroupArray) {
+        //-- copy array
+        _groupList.clear();
+        
+        for (int i = 0; i < vGroupArray.length; i++) {
+                this._groupList.add(vGroupArray[i]);
+        }
+    }
+
+    /**
+     * 
+     * 
+     * @param index
+     * @param vSetting
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void setSetting(
+            final int index,
+            final jalview.schemabinding.version2.Setting vSetting)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._settingList.size()) {
+            throw new IndexOutOfBoundsException("setSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]");
+        }
+        
+        this._settingList.set(index, vSetting);
+    }
+
+    /**
+     * 
+     * 
+     * @param vSettingArray
+     */
+    public void setSetting(
+            final jalview.schemabinding.version2.Setting[] vSettingArray) {
+        //-- copy array
+        _settingList.clear();
+        
+        for (int i = 0; i < vSettingArray.length; i++) {
+                this._settingList.add(vSettingArray[i]);
+        }
+    }
+
+    /**
+     * Method unmarshal.
+     * 
+     * @param reader
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @return the unmarshaled
+     * jalview.schemabinding.version2.FeatureSettings
+     */
+    public static jalview.schemabinding.version2.FeatureSettings unmarshal(
+            final java.io.Reader reader)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller.unmarshal(jalview.schemabinding.version2.FeatureSettings.class, reader);
+    }
+
+    /**
+     * 
+     * 
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void validate(
+    )
+    throws org.exolab.castor.xml.ValidationException {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    }
+
+}