JAL-1369 updated project schema - flag on JSeq to mark view’s reference seq

[jalview.git] / src / jalview / schemabinding / version2 / JSeq.java

diff --git a/src/jalview/schemabinding/version2/JSeq.java b/src/jalview/schemabinding/version2/JSeq.java
index 9ca6708..7c6308e 100644 (file)
--- a/src/jalview/schemabinding/version2/JSeq.java
+++ b/src/jalview/schemabinding/version2/JSeq.java
@@ -72,6 +72,16 @@ public class JSeq implements java.io.Serializable
   private boolean _has_hidden;
 
   /**
+   * Field _viewreference.
+   */
+  private boolean _viewreference;
+
+  /**
+   * keeps track of state for field: _viewreference
+   */
+  private boolean _has_viewreference;
+
+  /**
    * Field _featuresList.
    */
   private java.util.Vector _featuresList;
@@ -256,6 +266,13 @@ public class JSeq implements java.io.Serializable
   }
 
   /**
+     */
+  public void deleteViewreference()
+  {
+    this._has_viewreference = false;
+  }
+
+  /**
    * Method enumerateFeatures.
    * 
    * @return an Enumeration over all jalview.schemabinding.version2.Features
@@ -549,6 +566,16 @@ public class JSeq implements java.io.Serializable
   }
 
   /**
+   * Returns the value of field 'viewreference'.
+   * 
+   * @return the value of field 'Viewreference'.
+   */
+  public boolean getViewreference()
+  {
+    return this._viewreference;
+  }
+
+  /**
    * Method hasColour.
    * 
    * @return true if at least one Colour has been added
@@ -589,6 +616,16 @@ public class JSeq implements java.io.Serializable
   }
 
   /**
+   * Method hasViewreference.
+   * 
+   * @return true if at least one Viewreference has been added
+   */
+  public boolean hasViewreference()
+  {
+    return this._has_viewreference;
+  }
+
+  /**
    * Returns the value of field 'hidden'.
    * 
    * @return the value of field 'Hidden'.
@@ -616,6 +653,16 @@ public class JSeq implements java.io.Serializable
   }
 
   /**
+   * Returns the value of field 'viewreference'.
+   * 
+   * @return the value of field 'Viewreference'.
+   */
+  public boolean isViewreference()
+  {
+    return this._viewreference;
+  }
+
+  /**
    * 
    * 
    * @param out
@@ -1004,6 +1051,18 @@ public class JSeq implements java.io.Serializable
   }
 
   /**
+   * Sets the value of field 'viewreference'.
+   * 
+   * @param viewreference
+   *          the value of field 'viewreference'.
+   */
+  public void setViewreference(final boolean viewreference)
+  {
+    this._viewreference = viewreference;
+    this._has_viewreference = true;
+  }
+
+  /**
    * Method unmarshal.
    * 
    * @param reader