-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
/*
* This class was automatically generated with
* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
package jalview.schemabinding.version2;
- //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
*
* @version $Revision$ $Date$
*/
-public class Pdbids extends jalview.schemabinding.version2.Pdbentry
-implements java.io.Serializable
+public class Pdbids extends jalview.schemabinding.version2.Pdbentry
+ implements java.io.Serializable
{
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
+ /**
+ * Field _structureStateList.
+ */
+ private java.util.Vector _structureStateList;
- /**
- * Field _structureStateList.
- */
- private java.util.Vector _structureStateList;
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+ public Pdbids()
+ {
+ super();
+ this._structureStateList = new java.util.Vector();
+ }
- //----------------/
- //- Constructors -/
- //----------------/
+ // -----------/
+ // - Methods -/
+ // -----------/
- public Pdbids() {
- super();
- this._structureStateList = new java.util.Vector();
- }
+ /**
+ *
+ *
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addStructureState(
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._structureStateList.addElement(vStructureState);
+ }
+ /**
+ *
+ *
+ * @param index
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addStructureState(
+ final int index,
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._structureStateList.add(index, vStructureState);
+ }
- //-----------/
- //- Methods -/
- //-----------/
+ /**
+ * Method enumerateStructureState.
+ *
+ * @return an Enumeration over all
+ * jalview.schemabinding.version2.StructureState elements
+ */
+ public java.util.Enumeration enumerateStructureState()
+ {
+ return this._structureStateList.elements();
+ }
- /**
- *
- *
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addStructureState(
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException {
- this._structureStateList.addElement(vStructureState);
+ /**
+ * Method getStructureState.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the jalview.schemabinding.version2.StructureState at
+ * the given index
+ */
+ public jalview.schemabinding.version2.StructureState getStructureState(
+ final int index) throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._structureStateList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "getStructureState: Index value '" + index
+ + "' not in range [0.."
+ + (this._structureStateList.size() - 1) + "]");
}
- /**
- *
- *
- * @param index
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void addStructureState(
- final int index,
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException {
- this._structureStateList.add(index, vStructureState);
- }
+ return (jalview.schemabinding.version2.StructureState) _structureStateList
+ .get(index);
+ }
- /**
- * Method enumerateStructureState.
- *
- * @return an Enumeration over all
- * jalview.schemabinding.version2.StructureState elements
- */
- public java.util.Enumeration enumerateStructureState(
- ) {
- return this._structureStateList.elements();
- }
+ /**
+ * Method getStructureState.Returns the contents of the collection in an
+ * Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public jalview.schemabinding.version2.StructureState[] getStructureState()
+ {
+ jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0];
+ return (jalview.schemabinding.version2.StructureState[]) this._structureStateList
+ .toArray(array);
+ }
- /**
- * Method getStructureState.
- *
- * @param index
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- * @return the value of the
- * jalview.schemabinding.version2.StructureState at the given
- * index
- */
- public jalview.schemabinding.version2.StructureState getStructureState(
- final int index)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._structureStateList.size()) {
- throw new IndexOutOfBoundsException("getStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]");
- }
-
- return (jalview.schemabinding.version2.StructureState) _structureStateList.get(index);
- }
+ /**
+ * Method getStructureStateCount.
+ *
+ * @return the size of this collection
+ */
+ public int getStructureStateCount()
+ {
+ return this._structureStateList.size();
+ }
- /**
- * Method getStructureState.Returns the contents of the
- * collection in an Array. <p>Note: Just in case the
- * collection contents are changing in another thread, we pass
- * a 0-length Array of the correct type into the API call.
- * This way we <i>know</i> that the Array returned is of
- * exactly the correct length.
- *
- * @return this collection as an Array
- */
- public jalview.schemabinding.version2.StructureState[] getStructureState(
- ) {
- jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0];
- return (jalview.schemabinding.version2.StructureState[]) this._structureStateList.toArray(array);
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
}
+ return true;
+ }
- /**
- * Method getStructureStateCount.
- *
- * @return the size of this collection
- */
- public int getStructureStateCount(
- ) {
- return this._structureStateList.size();
- }
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid(
- ) {
- try {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- }
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
+ /**
*/
- public void marshal(
- final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, out);
- }
+ public void removeAllStructureState()
+ {
+ this._structureStateList.clear();
+ }
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException if an IOException occurs during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- */
- public void marshal(
- final org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, handler);
- }
+ /**
+ * Method removeStructureState.
+ *
+ * @param vStructureState
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeStructureState(
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ {
+ boolean removed = _structureStateList.remove(vStructureState);
+ return removed;
+ }
- /**
- */
- public void removeAllStructureState(
- ) {
- this._structureStateList.clear();
- }
+ /**
+ * Method removeStructureStateAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public jalview.schemabinding.version2.StructureState removeStructureStateAt(
+ final int index)
+ {
+ java.lang.Object obj = this._structureStateList.remove(index);
+ return (jalview.schemabinding.version2.StructureState) obj;
+ }
- /**
- * Method removeStructureState.
- *
- * @param vStructureState
- * @return true if the object was removed from the collection.
- */
- public boolean removeStructureState(
- final jalview.schemabinding.version2.StructureState vStructureState) {
- boolean removed = _structureStateList.remove(vStructureState);
- return removed;
+ /**
+ *
+ *
+ * @param index
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setStructureState(
+ final int index,
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._structureStateList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "setStructureState: Index value '" + index
+ + "' not in range [0.."
+ + (this._structureStateList.size() - 1) + "]");
}
- /**
- * Method removeStructureStateAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.StructureState removeStructureStateAt(
- final int index) {
- java.lang.Object obj = this._structureStateList.remove(index);
- return (jalview.schemabinding.version2.StructureState) obj;
- }
+ this._structureStateList.set(index, vStructureState);
+ }
- /**
- *
- *
- * @param index
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException if the index
- * given is outside the bounds of the collection
- */
- public void setStructureState(
- final int index,
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException {
- // check bounds for index
- if (index < 0 || index >= this._structureStateList.size()) {
- throw new IndexOutOfBoundsException("setStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]");
- }
-
- this._structureStateList.set(index, vStructureState);
- }
+ /**
+ *
+ *
+ * @param vStructureStateArray
+ */
+ public void setStructureState(
+ final jalview.schemabinding.version2.StructureState[] vStructureStateArray)
+ {
+ // -- copy array
+ _structureStateList.clear();
- /**
- *
- *
- * @param vStructureStateArray
- */
- public void setStructureState(
- final jalview.schemabinding.version2.StructureState[] vStructureStateArray) {
- //-- copy array
- _structureStateList.clear();
-
- for (int i = 0; i < vStructureStateArray.length; i++) {
- this._structureStateList.add(vStructureStateArray[i]);
- }
+ for (int i = 0; i < vStructureStateArray.length; i++)
+ {
+ this._structureStateList.add(vStructureStateArray[i]);
}
+ }
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @return the unmarshaled
- * jalview.schemabinding.version2.Pdbentry
- */
- public static jalview.schemabinding.version2.Pdbentry unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(jalview.schemabinding.version2.Pdbids.class, reader);
- }
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Pdbentry
+ */
+ public static jalview.schemabinding.version2.Pdbentry unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.Pdbentry) Unmarshaller
+ .unmarshal(jalview.schemabinding.version2.Pdbids.class, reader);
+ }
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void validate(
- )
- throws org.exolab.castor.xml.ValidationException {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
}
git://source.jalview.org / jalview.git / blobdiff