-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
- * \r
- * This file is part of Jalview.\r
- * \r
- * Jalview is free software: you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License \r
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
- * \r
- * Jalview is distributed in the hope that it will be useful, but \r
- * WITHOUT ANY WARRANTY; without even the implied warranty \r
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
- * PURPOSE. See the GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
- */\r
-package jalview.schemabinding.version2;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-\r
-/**\r
- * Class Setting.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class Setting implements java.io.Serializable\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * Field _type.\r
- */\r
- private java.lang.String _type;\r
-\r
- /**\r
- * Field _colour.\r
- */\r
- private int _colour;\r
-\r
- /**\r
- * keeps track of state for field: _colour\r
- */\r
- private boolean _has_colour;\r
-\r
- /**\r
- * Field _display.\r
- */\r
- private boolean _display;\r
-\r
- /**\r
- * keeps track of state for field: _display\r
- */\r
- private boolean _has_display;\r
-\r
- /**\r
- * Field _order.\r
- */\r
- private float _order;\r
-\r
- /**\r
- * keeps track of state for field: _order\r
- */\r
- private boolean _has_order;\r
-\r
- /**\r
- * Optional minimum colour for graduated feature colour\r
- */\r
- private int _mincolour;\r
-\r
- /**\r
- * keeps track of state for field: _mincolour\r
- */\r
- private boolean _has_mincolour;\r
-\r
- /**\r
- * threshold value for graduated feature colour\r
- */\r
- private float _threshold;\r
-\r
- /**\r
- * keeps track of state for field: _threshold\r
- */\r
- private boolean _has_threshold;\r
-\r
- /**\r
- * threshold type for graduated feature colour\r
- */\r
- private int _threshstate;\r
-\r
- /**\r
- * keeps track of state for field: _threshstate\r
- */\r
- private boolean _has_threshstate;\r
-\r
- /**\r
- * Field _max.\r
- */\r
- private float _max;\r
-\r
- /**\r
- * keeps track of state for field: _max\r
- */\r
- private boolean _has_max;\r
-\r
- /**\r
- * Field _min.\r
- */\r
- private float _min;\r
-\r
- /**\r
- * keeps track of state for field: _min\r
- */\r
- private boolean _has_min;\r
-\r
- /**\r
- * Field _colourByLabel.\r
- */\r
- private boolean _colourByLabel;\r
-\r
- /**\r
- * keeps track of state for field: _colourByLabel\r
- */\r
- private boolean _has_colourByLabel;\r
-\r
- /**\r
- * Field _autoScale.\r
- */\r
- private boolean _autoScale;\r
-\r
- /**\r
- * keeps track of state for field: _autoScale\r
- */\r
- private boolean _has_autoScale;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public Setting()\r
- {\r
- super();\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- */\r
- public void deleteAutoScale()\r
- {\r
- this._has_autoScale = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteColour()\r
- {\r
- this._has_colour = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteColourByLabel()\r
- {\r
- this._has_colourByLabel = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteDisplay()\r
- {\r
- this._has_display = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteMax()\r
- {\r
- this._has_max = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteMin()\r
- {\r
- this._has_min = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteMincolour()\r
- {\r
- this._has_mincolour = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteOrder()\r
- {\r
- this._has_order = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteThreshold()\r
- {\r
- this._has_threshold = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteThreshstate()\r
- {\r
- this._has_threshstate = false;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'autoScale'.\r
- * \r
- * @return the value of field 'AutoScale'.\r
- */\r
- public boolean getAutoScale()\r
- {\r
- return this._autoScale;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'colour'.\r
- * \r
- * @return the value of field 'Colour'.\r
- */\r
- public int getColour()\r
- {\r
- return this._colour;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'colourByLabel'.\r
- * \r
- * @return the value of field 'ColourByLabel'.\r
- */\r
- public boolean getColourByLabel()\r
- {\r
- return this._colourByLabel;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'display'.\r
- * \r
- * @return the value of field 'Display'.\r
- */\r
- public boolean getDisplay()\r
- {\r
- return this._display;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'max'.\r
- * \r
- * @return the value of field 'Max'.\r
- */\r
- public float getMax()\r
- {\r
- return this._max;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'min'.\r
- * \r
- * @return the value of field 'Min'.\r
- */\r
- public float getMin()\r
- {\r
- return this._min;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'mincolour'. The field 'mincolour' has the\r
- * following description: Optional minimum colour for graduated feature colour\r
- * \r
- * @return the value of field 'Mincolour'.\r
- */\r
- public int getMincolour()\r
- {\r
- return this._mincolour;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'order'.\r
- * \r
- * @return the value of field 'Order'.\r
- */\r
- public float getOrder()\r
- {\r
- return this._order;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'threshold'. The field 'threshold' has the\r
- * following description: threshold value for graduated feature colour\r
- * \r
- * @return the value of field 'Threshold'.\r
- */\r
- public float getThreshold()\r
- {\r
- return this._threshold;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'threshstate'. The field 'threshstate' has the\r
- * following description: threshold type for graduated feature colour\r
- * \r
- * @return the value of field 'Threshstate'.\r
- */\r
- public int getThreshstate()\r
- {\r
- return this._threshstate;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'type'.\r
- * \r
- * @return the value of field 'Type'.\r
- */\r
- public java.lang.String getType()\r
- {\r
- return this._type;\r
- }\r
-\r
- /**\r
- * Method hasAutoScale.\r
- * \r
- * @return true if at least one AutoScale has been added\r
- */\r
- public boolean hasAutoScale()\r
- {\r
- return this._has_autoScale;\r
- }\r
-\r
- /**\r
- * Method hasColour.\r
- * \r
- * @return true if at least one Colour has been added\r
- */\r
- public boolean hasColour()\r
- {\r
- return this._has_colour;\r
- }\r
-\r
- /**\r
- * Method hasColourByLabel.\r
- * \r
- * @return true if at least one ColourByLabel has been added\r
- */\r
- public boolean hasColourByLabel()\r
- {\r
- return this._has_colourByLabel;\r
- }\r
-\r
- /**\r
- * Method hasDisplay.\r
- * \r
- * @return true if at least one Display has been added\r
- */\r
- public boolean hasDisplay()\r
- {\r
- return this._has_display;\r
- }\r
-\r
- /**\r
- * Method hasMax.\r
- * \r
- * @return true if at least one Max has been added\r
- */\r
- public boolean hasMax()\r
- {\r
- return this._has_max;\r
- }\r
-\r
- /**\r
- * Method hasMin.\r
- * \r
- * @return true if at least one Min has been added\r
- */\r
- public boolean hasMin()\r
- {\r
- return this._has_min;\r
- }\r
-\r
- /**\r
- * Method hasMincolour.\r
- * \r
- * @return true if at least one Mincolour has been added\r
- */\r
- public boolean hasMincolour()\r
- {\r
- return this._has_mincolour;\r
- }\r
-\r
- /**\r
- * Method hasOrder.\r
- * \r
- * @return true if at least one Order has been added\r
- */\r
- public boolean hasOrder()\r
- {\r
- return this._has_order;\r
- }\r
-\r
- /**\r
- * Method hasThreshold.\r
- * \r
- * @return true if at least one Threshold has been added\r
- */\r
- public boolean hasThreshold()\r
- {\r
- return this._has_threshold;\r
- }\r
-\r
- /**\r
- * Method hasThreshstate.\r
- * \r
- * @return true if at least one Threshstate has been added\r
- */\r
- public boolean hasThreshstate()\r
- {\r
- return this._has_threshstate;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'autoScale'.\r
- * \r
- * @return the value of field 'AutoScale'.\r
- */\r
- public boolean isAutoScale()\r
- {\r
- return this._autoScale;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'colourByLabel'.\r
- * \r
- * @return the value of field 'ColourByLabel'.\r
- */\r
- public boolean isColourByLabel()\r
- {\r
- return this._colourByLabel;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'display'.\r
- * \r
- * @return the value of field 'Display'.\r
- */\r
- public boolean isDisplay()\r
- {\r
- return this._display;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
- {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
- return false;\r
- }\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- */\r
- public void marshal(final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException\r
- * if an IOException occurs during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- */\r
- public void marshal(final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException,\r
- org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'autoScale'.\r
- * \r
- * @param autoScale\r
- * the value of field 'autoScale'.\r
- */\r
- public void setAutoScale(final boolean autoScale)\r
- {\r
- this._autoScale = autoScale;\r
- this._has_autoScale = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'colour'.\r
- * \r
- * @param colour\r
- * the value of field 'colour'.\r
- */\r
- public void setColour(final int colour)\r
- {\r
- this._colour = colour;\r
- this._has_colour = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'colourByLabel'.\r
- * \r
- * @param colourByLabel\r
- * the value of field 'colourByLabel'.\r
- */\r
- public void setColourByLabel(final boolean colourByLabel)\r
- {\r
- this._colourByLabel = colourByLabel;\r
- this._has_colourByLabel = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'display'.\r
- * \r
- * @param display\r
- * the value of field 'display'.\r
- */\r
- public void setDisplay(final boolean display)\r
- {\r
- this._display = display;\r
- this._has_display = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'max'.\r
- * \r
- * @param max\r
- * the value of field 'max'.\r
- */\r
- public void setMax(final float max)\r
- {\r
- this._max = max;\r
- this._has_max = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'min'.\r
- * \r
- * @param min\r
- * the value of field 'min'.\r
- */\r
- public void setMin(final float min)\r
- {\r
- this._min = min;\r
- this._has_min = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'mincolour'. The field 'mincolour' has the\r
- * following description: Optional minimum colour for graduated feature colour\r
- * \r
- * @param mincolour\r
- * the value of field 'mincolour'.\r
- */\r
- public void setMincolour(final int mincolour)\r
- {\r
- this._mincolour = mincolour;\r
- this._has_mincolour = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'order'.\r
- * \r
- * @param order\r
- * the value of field 'order'.\r
- */\r
- public void setOrder(final float order)\r
- {\r
- this._order = order;\r
- this._has_order = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'threshold'. The field 'threshold' has the\r
- * following description: threshold value for graduated feature colour\r
- * \r
- * @param threshold\r
- * the value of field 'threshold'.\r
- */\r
- public void setThreshold(final float threshold)\r
- {\r
- this._threshold = threshold;\r
- this._has_threshold = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'threshstate'. The field 'threshstate' has the\r
- * following description: threshold type for graduated feature colour\r
- * \r
- * @param threshstate\r
- * the value of field 'threshstate'.\r
- */\r
- public void setThreshstate(final int threshstate)\r
- {\r
- this._threshstate = threshstate;\r
- this._has_threshstate = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'type'.\r
- * \r
- * @param type\r
- * the value of field 'type'.\r
- */\r
- public void setType(final java.lang.String type)\r
- {\r
- this._type = type;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- * @return the unmarshaled jalview.schemabinding.version2.Settin\r
- */\r
- public static jalview.schemabinding.version2.Setting unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.Setting) Unmarshaller.unmarshal(\r
- jalview.schemabinding.version2.Setting.class, reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- */\r
- public void validate() throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
-\r
-}\r
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+ //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Setting.
+ *
+ * @version $Revision$ $Date$
+ */
+public class Setting implements java.io.Serializable {
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * Field _type.
+ */
+ private java.lang.String _type;
+
+ /**
+ * Field _colour.
+ */
+ private int _colour;
+
+ /**
+ * keeps track of state for field: _colour
+ */
+ private boolean _has_colour;
+
+ /**
+ * Field _display.
+ */
+ private boolean _display;
+
+ /**
+ * keeps track of state for field: _display
+ */
+ private boolean _has_display;
+
+ /**
+ * Field _order.
+ */
+ private float _order;
+
+ /**
+ * keeps track of state for field: _order
+ */
+ private boolean _has_order;
+
+ /**
+ * Optional minimum colour for graduated feature colour
+ */
+ private int _mincolour;
+
+ /**
+ * keeps track of state for field: _mincolour
+ */
+ private boolean _has_mincolour;
+
+ /**
+ * threshold value for graduated feature colour
+ */
+ private float _threshold;
+
+ /**
+ * keeps track of state for field: _threshold
+ */
+ private boolean _has_threshold;
+
+ /**
+ * threshold type for graduated feature colour
+ */
+ private int _threshstate;
+
+ /**
+ * keeps track of state for field: _threshstate
+ */
+ private boolean _has_threshstate;
+
+ /**
+ * Field _max.
+ */
+ private float _max;
+
+ /**
+ * keeps track of state for field: _max
+ */
+ private boolean _has_max;
+
+ /**
+ * Field _min.
+ */
+ private float _min;
+
+ /**
+ * keeps track of state for field: _min
+ */
+ private boolean _has_min;
+
+ /**
+ * Field _colourByLabel.
+ */
+ private boolean _colourByLabel;
+
+ /**
+ * keeps track of state for field: _colourByLabel
+ */
+ private boolean _has_colourByLabel;
+
+ /**
+ * Field _autoScale.
+ */
+ private boolean _autoScale;
+
+ /**
+ * keeps track of state for field: _autoScale
+ */
+ private boolean _has_autoScale;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public Setting() {
+ super();
+ }
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ */
+ public void deleteAutoScale(
+ ) {
+ this._has_autoScale= false;
+ }
+
+ /**
+ */
+ public void deleteColour(
+ ) {
+ this._has_colour= false;
+ }
+
+ /**
+ */
+ public void deleteColourByLabel(
+ ) {
+ this._has_colourByLabel= false;
+ }
+
+ /**
+ */
+ public void deleteDisplay(
+ ) {
+ this._has_display= false;
+ }
+
+ /**
+ */
+ public void deleteMax(
+ ) {
+ this._has_max= false;
+ }
+
+ /**
+ */
+ public void deleteMin(
+ ) {
+ this._has_min= false;
+ }
+
+ /**
+ */
+ public void deleteMincolour(
+ ) {
+ this._has_mincolour= false;
+ }
+
+ /**
+ */
+ public void deleteOrder(
+ ) {
+ this._has_order= false;
+ }
+
+ /**
+ */
+ public void deleteThreshold(
+ ) {
+ this._has_threshold= false;
+ }
+
+ /**
+ */
+ public void deleteThreshstate(
+ ) {
+ this._has_threshstate= false;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean getAutoScale(
+ ) {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colour'.
+ *
+ * @return the value of field 'Colour'.
+ */
+ public int getColour(
+ ) {
+ return this._colour;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean getColourByLabel(
+ ) {
+ return this._colourByLabel;
+ }
+
+ /**
+ * Returns the value of field 'display'.
+ *
+ * @return the value of field 'Display'.
+ */
+ public boolean getDisplay(
+ ) {
+ return this._display;
+ }
+
+ /**
+ * Returns the value of field 'max'.
+ *
+ * @return the value of field 'Max'.
+ */
+ public float getMax(
+ ) {
+ return this._max;
+ }
+
+ /**
+ * Returns the value of field 'min'.
+ *
+ * @return the value of field 'Min'.
+ */
+ public float getMin(
+ ) {
+ return this._min;
+ }
+
+ /**
+ * Returns the value of field 'mincolour'. The field
+ * 'mincolour' has the following description: Optional minimum
+ * colour for graduated feature colour
+ *
+ * @return the value of field 'Mincolour'.
+ */
+ public int getMincolour(
+ ) {
+ return this._mincolour;
+ }
+
+ /**
+ * Returns the value of field 'order'.
+ *
+ * @return the value of field 'Order'.
+ */
+ public float getOrder(
+ ) {
+ return this._order;
+ }
+
+ /**
+ * Returns the value of field 'threshold'. The field
+ * 'threshold' has the following description: threshold value
+ * for graduated feature colour
+ *
+ * @return the value of field 'Threshold'.
+ */
+ public float getThreshold(
+ ) {
+ return this._threshold;
+ }
+
+ /**
+ * Returns the value of field 'threshstate'. The field
+ * 'threshstate' has the following description: threshold type
+ * for graduated feature colour
+ *
+ * @return the value of field 'Threshstate'.
+ */
+ public int getThreshstate(
+ ) {
+ return this._threshstate;
+ }
+
+ /**
+ * Returns the value of field 'type'.
+ *
+ * @return the value of field 'Type'.
+ */
+ public java.lang.String getType(
+ ) {
+ return this._type;
+ }
+
+ /**
+ * Method hasAutoScale.
+ *
+ * @return true if at least one AutoScale has been added
+ */
+ public boolean hasAutoScale(
+ ) {
+ return this._has_autoScale;
+ }
+
+ /**
+ * Method hasColour.
+ *
+ * @return true if at least one Colour has been added
+ */
+ public boolean hasColour(
+ ) {
+ return this._has_colour;
+ }
+
+ /**
+ * Method hasColourByLabel.
+ *
+ * @return true if at least one ColourByLabel has been added
+ */
+ public boolean hasColourByLabel(
+ ) {
+ return this._has_colourByLabel;
+ }
+
+ /**
+ * Method hasDisplay.
+ *
+ * @return true if at least one Display has been added
+ */
+ public boolean hasDisplay(
+ ) {
+ return this._has_display;
+ }
+
+ /**
+ * Method hasMax.
+ *
+ * @return true if at least one Max has been added
+ */
+ public boolean hasMax(
+ ) {
+ return this._has_max;
+ }
+
+ /**
+ * Method hasMin.
+ *
+ * @return true if at least one Min has been added
+ */
+ public boolean hasMin(
+ ) {
+ return this._has_min;
+ }
+
+ /**
+ * Method hasMincolour.
+ *
+ * @return true if at least one Mincolour has been added
+ */
+ public boolean hasMincolour(
+ ) {
+ return this._has_mincolour;
+ }
+
+ /**
+ * Method hasOrder.
+ *
+ * @return true if at least one Order has been added
+ */
+ public boolean hasOrder(
+ ) {
+ return this._has_order;
+ }
+
+ /**
+ * Method hasThreshold.
+ *
+ * @return true if at least one Threshold has been added
+ */
+ public boolean hasThreshold(
+ ) {
+ return this._has_threshold;
+ }
+
+ /**
+ * Method hasThreshstate.
+ *
+ * @return true if at least one Threshstate has been added
+ */
+ public boolean hasThreshstate(
+ ) {
+ return this._has_threshstate;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean isAutoScale(
+ ) {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean isColourByLabel(
+ ) {
+ return this._colourByLabel;
+ }
+
+ /**
+ * Returns the value of field 'display'.
+ *
+ * @return the value of field 'Display'.
+ */
+ public boolean isDisplay(
+ ) {
+ return this._display;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid(
+ ) {
+ try {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void marshal(
+ final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException if an IOException occurs during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ */
+ public void marshal(
+ final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'autoScale'.
+ *
+ * @param autoScale the value of field 'autoScale'.
+ */
+ public void setAutoScale(
+ final boolean autoScale) {
+ this._autoScale = autoScale;
+ this._has_autoScale = true;
+ }
+
+ /**
+ * Sets the value of field 'colour'.
+ *
+ * @param colour the value of field 'colour'.
+ */
+ public void setColour(
+ final int colour) {
+ this._colour = colour;
+ this._has_colour = true;
+ }
+
+ /**
+ * Sets the value of field 'colourByLabel'.
+ *
+ * @param colourByLabel the value of field 'colourByLabel'.
+ */
+ public void setColourByLabel(
+ final boolean colourByLabel) {
+ this._colourByLabel = colourByLabel;
+ this._has_colourByLabel = true;
+ }
+
+ /**
+ * Sets the value of field 'display'.
+ *
+ * @param display the value of field 'display'.
+ */
+ public void setDisplay(
+ final boolean display) {
+ this._display = display;
+ this._has_display = true;
+ }
+
+ /**
+ * Sets the value of field 'max'.
+ *
+ * @param max the value of field 'max'.
+ */
+ public void setMax(
+ final float max) {
+ this._max = max;
+ this._has_max = true;
+ }
+
+ /**
+ * Sets the value of field 'min'.
+ *
+ * @param min the value of field 'min'.
+ */
+ public void setMin(
+ final float min) {
+ this._min = min;
+ this._has_min = true;
+ }
+
+ /**
+ * Sets the value of field 'mincolour'. The field 'mincolour'
+ * has the following description: Optional minimum colour for
+ * graduated feature colour
+ *
+ * @param mincolour the value of field 'mincolour'.
+ */
+ public void setMincolour(
+ final int mincolour) {
+ this._mincolour = mincolour;
+ this._has_mincolour = true;
+ }
+
+ /**
+ * Sets the value of field 'order'.
+ *
+ * @param order the value of field 'order'.
+ */
+ public void setOrder(
+ final float order) {
+ this._order = order;
+ this._has_order = true;
+ }
+
+ /**
+ * Sets the value of field 'threshold'. The field 'threshold'
+ * has the following description: threshold value for graduated
+ * feature colour
+ *
+ * @param threshold the value of field 'threshold'.
+ */
+ public void setThreshold(
+ final float threshold) {
+ this._threshold = threshold;
+ this._has_threshold = true;
+ }
+
+ /**
+ * Sets the value of field 'threshstate'. The field
+ * 'threshstate' has the following description: threshold type
+ * for graduated feature colour
+ *
+ * @param threshstate the value of field 'threshstate'.
+ */
+ public void setThreshstate(
+ final int threshstate) {
+ this._threshstate = threshstate;
+ this._has_threshstate = true;
+ }
+
+ /**
+ * Sets the value of field 'type'.
+ *
+ * @param type the value of field 'type'.
+ */
+ public void setType(
+ final java.lang.String type) {
+ this._type = type;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Settin
+ */
+ public static jalview.schemabinding.version2.Setting unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ return (jalview.schemabinding.version2.Setting) Unmarshaller.unmarshal(jalview.schemabinding.version2.Setting.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void validate(
+ )
+ throws org.exolab.castor.xml.ValidationException {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff