-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
- * \r
- * This file is part of Jalview.\r
- * \r
- * Jalview is free software: you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License \r
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
- * \r
- * Jalview is distributed in the hope that it will be useful, but \r
- * WITHOUT ANY WARRANTY; without even the implied warranty \r
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
- * PURPOSE. See the GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
- */\r
-package jalview.schemabinding.version2.descriptors;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import jalview.schemabinding.version2.SequenceSet;\r
-\r
-/**\r
- * Class SequenceSetDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceSetDescriptor extends\r
- org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * Field _elementDefinition.\r
- */\r
- private boolean _elementDefinition;\r
-\r
- /**\r
- * Field _nsPrefix.\r
- */\r
- private java.lang.String _nsPrefix;\r
-\r
- /**\r
- * Field _nsURI.\r
- */\r
- private java.lang.String _nsURI;\r
-\r
- /**\r
- * Field _xmlName.\r
- */\r
- private java.lang.String _xmlName;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public SequenceSetDescriptor()\r
- {\r
- super();\r
- _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- _xmlName = "SequenceSet";\r
- _elementDefinition = true;\r
-\r
- // -- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- // -- initialize attribute descriptors\r
-\r
- // -- _gapChar\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.String.class, "_gapChar", "gapChar",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getGapChar();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.setGapChar((java.lang.String) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _gapChar\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { // -- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _datasetId\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.String.class, "_datasetId", "datasetId",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getDatasetId();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.setDatasetId((java.lang.String) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _datasetId\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { // -- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- initialize element descriptors\r
-\r
- // -- _sequenceList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.Sequence.class, "_sequenceList",\r
- "Sequence", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequence();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequence((jalview.schemabinding.version2.Sequence) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllSequence();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.Sequence();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _sequenceList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _annotationList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.Annotation.class,\r
- "_annotationList", "Annotation",\r
- org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getAnnotation();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addAnnotation((jalview.schemabinding.version2.Annotation) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllAnnotation();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.Annotation();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _annotationList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _sequenceSetPropertiesList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.SequenceSetProperties.class,\r
- "_sequenceSetPropertiesList", "sequenceSetProperties",\r
- org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequenceSetProperties();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllSequenceSetProperties();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.SequenceSetProperties();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _sequenceSetPropertiesList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _alcodonFrameList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.AlcodonFrame.class,\r
- "_alcodonFrameList", "AlcodonFrame",\r
- org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getAlcodonFrame();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllAlcodonFrame();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.AlcodonFrame();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _alcodonFrameList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- * Method getAccessMode.\r
- * \r
- * @return the access mode specified for this class.\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- }\r
-\r
- /**\r
- * Method getIdentity.\r
- * \r
- * @return the identity field, null if this class has no identity.\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return super.getIdentity();\r
- }\r
-\r
- /**\r
- * Method getJavaClass.\r
- * \r
- * @return the Java class represented by this descriptor.\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.SequenceSet.class;\r
- }\r
-\r
- /**\r
- * Method getNameSpacePrefix.\r
- * \r
- * @return the namespace prefix to use when marshaling as XML.\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return _nsPrefix;\r
- }\r
-\r
- /**\r
- * Method getNameSpaceURI.\r
- * \r
- * @return the namespace URI used when marshaling and unmarshaling as XML.\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return _nsURI;\r
- }\r
-\r
- /**\r
- * Method getValidator.\r
- * \r
- * @return a specific validator for the class described by this\r
- * ClassDescriptor.\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- }\r
-\r
- /**\r
- * Method getXMLName.\r
- * \r
- * @return the XML Name for the Class being described.\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return _xmlName;\r
- }\r
-\r
- /**\r
- * Method isElementDefinition.\r
- * \r
- * @return true if XML schema definition of this Class is that of a global\r
- * element or element with anonymous type definition.\r
- */\r
- public boolean isElementDefinition()\r
- {\r
- return _elementDefinition;\r
- }\r
-\r
-}\r
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2.descriptors;
+
+ //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import jalview.schemabinding.version2.SequenceSet;
+
+/**
+ * Class SequenceSetDescriptor.
+ *
+ * @version $Revision$ $Date$
+ */
+public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * Field _elementDefinition.
+ */
+ private boolean _elementDefinition;
+
+ /**
+ * Field _nsPrefix.
+ */
+ private java.lang.String _nsPrefix;
+
+ /**
+ * Field _nsURI.
+ */
+ private java.lang.String _nsURI;
+
+ /**
+ * Field _xmlName.
+ */
+ private java.lang.String _xmlName;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public SequenceSetDescriptor() {
+ super();
+ _nsURI = "www.vamsas.ac.uk/jalview/version2";
+ _xmlName = "SequenceSet";
+ _elementDefinition = true;
+
+ //-- set grouping compositor
+ setCompositorAsSequence();
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
+ org.exolab.castor.mapping.FieldHandler handler = null;
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;
+ //-- initialize attribute descriptors
+
+ //-- _gapChar
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
+ desc.setImmutable(true);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getGapChar();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.setGapChar( (java.lang.String) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return null;
+ }
+ };
+ desc.setHandler(handler);
+ desc.setRequired(true);
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _gapChar
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(1);
+ { //-- local scope
+ org.exolab.castor.xml.validators.StringValidator typeValidator;
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+ fieldValidator.setValidator(typeValidator);
+ typeValidator.setWhiteSpace("preserve");
+ }
+ desc.setValidator(fieldValidator);
+ //-- _datasetId
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);
+ desc.setImmutable(true);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getDatasetId();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.setDatasetId( (java.lang.String) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return null;
+ }
+ };
+ desc.setHandler(handler);
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _datasetId
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ { //-- local scope
+ org.exolab.castor.xml.validators.StringValidator typeValidator;
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+ fieldValidator.setValidator(typeValidator);
+ typeValidator.setWhiteSpace("preserve");
+ }
+ desc.setValidator(fieldValidator);
+ //-- initialize element descriptors
+
+ //-- _sequenceList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getSequence();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.addSequence( (jalview.schemabinding.version2.Sequence) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.removeAllSequence();
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return new jalview.schemabinding.version2.Sequence();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _sequenceList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { //-- local scope
+ }
+ desc.setValidator(fieldValidator);
+ //-- _annotationList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getAnnotation();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.removeAllAnnotation();
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return new jalview.schemabinding.version2.Annotation();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _annotationList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { //-- local scope
+ }
+ desc.setValidator(fieldValidator);
+ //-- _sequenceSetPropertiesList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getSequenceSetProperties();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.removeAllSequenceSetProperties();
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return new jalview.schemabinding.version2.SequenceSetProperties();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _sequenceSetPropertiesList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { //-- local scope
+ }
+ desc.setValidator(fieldValidator);
+ //-- _alcodonFrameList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {
+ public java.lang.Object getValue( java.lang.Object object )
+ throws IllegalStateException
+ {
+ SequenceSet target = (SequenceSet) object;
+ return target.getAlcodonFrame();
+ }
+ public void setValue( java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+ try {
+ SequenceSet target = (SequenceSet) object;
+ target.removeAllAlcodonFrame();
+ } catch (java.lang.Exception ex) {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+ public java.lang.Object newInstance(java.lang.Object parent) {
+ return new jalview.schemabinding.version2.AlcodonFrame();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ //-- validation code for: _alcodonFrameList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { //-- local scope
+ }
+ desc.setValidator(fieldValidator);
+ }
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ * Method getAccessMode.
+ *
+ * @return the access mode specified for this class.
+ */
+ public org.exolab.castor.mapping.AccessMode getAccessMode(
+ ) {
+ return null;
+ }
+
+ /**
+ * Method getIdentity.
+ *
+ * @return the identity field, null if this class has no
+ * identity.
+ */
+ public org.exolab.castor.mapping.FieldDescriptor getIdentity(
+ ) {
+ return super.getIdentity();
+ }
+
+ /**
+ * Method getJavaClass.
+ *
+ * @return the Java class represented by this descriptor.
+ */
+ public java.lang.Class getJavaClass(
+ ) {
+ return jalview.schemabinding.version2.SequenceSet.class;
+ }
+
+ /**
+ * Method getNameSpacePrefix.
+ *
+ * @return the namespace prefix to use when marshaling as XML.
+ */
+ public java.lang.String getNameSpacePrefix(
+ ) {
+ return _nsPrefix;
+ }
+
+ /**
+ * Method getNameSpaceURI.
+ *
+ * @return the namespace URI used when marshaling and
+ * unmarshaling as XML.
+ */
+ public java.lang.String getNameSpaceURI(
+ ) {
+ return _nsURI;
+ }
+
+ /**
+ * Method getValidator.
+ *
+ * @return a specific validator for the class described by this
+ * ClassDescriptor.
+ */
+ public org.exolab.castor.xml.TypeValidator getValidator(
+ ) {
+ return this;
+ }
+
+ /**
+ * Method getXMLName.
+ *
+ * @return the XML Name for the Class being described.
+ */
+ public java.lang.String getXMLName(
+ ) {
+ return _xmlName;
+ }
+
+ /**
+ * Method isElementDefinition.
+ *
+ * @return true if XML schema definition of this Class is that
+ * of a global
+ * element or element with anonymous type definition.
+ */
+ public boolean isElementDefinition(
+ ) {
+ return _elementDefinition;
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff