JAL-3130 de-multi-release-jar.sh Script to make multi-release jar file single release.
[jalview.git] / src / jalview / schemabinding / version2 / descriptors / StructureStateDescriptor.java
index cd50167..16d091b 100644 (file)
-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
- * \r
- * This file is part of Jalview.\r
- * \r
- * Jalview is free software: you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License \r
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
- * \r
- * Jalview is distributed in the hope that it will be useful, but \r
- * WITHOUT ANY WARRANTY; without even the implied warranty \r
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
- * PURPOSE.  See the GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
- */\r
-package jalview.schemabinding.version2.descriptors;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import jalview.schemabinding.version2.StructureState;\r
-\r
-/**\r
- * Class StructureStateDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class StructureStateDescriptor extends\r
-        org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
-{\r
-\r
-  // --------------------------/\r
-  // - Class/Member Variables -/\r
-  // --------------------------/\r
-\r
-  /**\r
-   * Field _elementDefinition.\r
-   */\r
-  private boolean _elementDefinition;\r
-\r
-  /**\r
-   * Field _nsPrefix.\r
-   */\r
-  private java.lang.String _nsPrefix;\r
-\r
-  /**\r
-   * Field _nsURI.\r
-   */\r
-  private java.lang.String _nsURI;\r
-\r
-  /**\r
-   * Field _xmlName.\r
-   */\r
-  private java.lang.String _xmlName;\r
-\r
-  // ----------------/\r
-  // - Constructors -/\r
-  // ----------------/\r
-\r
-  public StructureStateDescriptor()\r
-  {\r
-    super();\r
-    _nsURI = "www.jalview.org";\r
-    _xmlName = "structureState";\r
-    _elementDefinition = true;\r
-    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
-    org.exolab.castor.mapping.FieldHandler handler = null;\r
-    org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
-    // -- _content\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.String.class, "_content", "PCDATA",\r
-            org.exolab.castor.xml.NodeType.Text);\r
-    desc.setImmutable(true);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        return target.getContent();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          target.setContent((java.lang.String) value);\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _content\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setWhiteSpace("preserve");\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- initialize attribute descriptors\r
-\r
-    // -- _visible\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Boolean.TYPE, "_visible", "visible",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        if (!target.hasVisible())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getVisible() ? java.lang.Boolean.TRUE\r
-                : java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteVisible();\r
-            return;\r
-          }\r
-          target.setVisible(((java.lang.Boolean) value).booleanValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _visible\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _xpos\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_xpos", "xpos",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        if (!target.hasXpos())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getXpos());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteXpos();\r
-            return;\r
-          }\r
-          target.setXpos(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _xpos\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _ypos\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_ypos", "ypos",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        if (!target.hasYpos())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getYpos());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteYpos();\r
-            return;\r
-          }\r
-          target.setYpos(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _ypos\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _width\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_width", "width",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        if (!target.hasWidth())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getWidth());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteWidth();\r
-            return;\r
-          }\r
-          target.setWidth(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _width\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _height\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_height", "height",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        if (!target.hasHeight())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getHeight());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteHeight();\r
-            return;\r
-          }\r
-          target.setHeight(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _height\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _viewId\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.String.class, "_viewId", "viewId",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    desc.setImmutable(true);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        StructureState target = (StructureState) object;\r
-        return target.getViewId();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          StructureState target = (StructureState) object;\r
-          target.setViewId((java.lang.String) value);\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _viewId\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setWhiteSpace("preserve");\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- initialize element descriptors\r
-\r
-  }\r
-\r
-  // -----------/\r
-  // - Methods -/\r
-  // -----------/\r
-\r
-  /**\r
-   * Method getAccessMode.\r
-   * \r
-   * @return the access mode specified for this class.\r
-   */\r
-  public org.exolab.castor.mapping.AccessMode getAccessMode()\r
-  {\r
-    return null;\r
-  }\r
-\r
-  /**\r
-   * Method getIdentity.\r
-   * \r
-   * @return the identity field, null if this class has no identity.\r
-   */\r
-  public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
-  {\r
-    return super.getIdentity();\r
-  }\r
-\r
-  /**\r
-   * Method getJavaClass.\r
-   * \r
-   * @return the Java class represented by this descriptor.\r
-   */\r
-  public java.lang.Class getJavaClass()\r
-  {\r
-    return jalview.schemabinding.version2.StructureState.class;\r
-  }\r
-\r
-  /**\r
-   * Method getNameSpacePrefix.\r
-   * \r
-   * @return the namespace prefix to use when marshaling as XML.\r
-   */\r
-  public java.lang.String getNameSpacePrefix()\r
-  {\r
-    return _nsPrefix;\r
-  }\r
-\r
-  /**\r
-   * Method getNameSpaceURI.\r
-   * \r
-   * @return the namespace URI used when marshaling and unmarshaling as XML.\r
-   */\r
-  public java.lang.String getNameSpaceURI()\r
-  {\r
-    return _nsURI;\r
-  }\r
-\r
-  /**\r
-   * Method getValidator.\r
-   * \r
-   * @return a specific validator for the class described by this\r
-   *         ClassDescriptor.\r
-   */\r
-  public org.exolab.castor.xml.TypeValidator getValidator()\r
-  {\r
-    return this;\r
-  }\r
-\r
-  /**\r
-   * Method getXMLName.\r
-   * \r
-   * @return the XML Name for the Class being described.\r
-   */\r
-  public java.lang.String getXMLName()\r
-  {\r
-    return _xmlName;\r
-  }\r
-\r
-  /**\r
-   * Method isElementDefinition.\r
-   * \r
-   * @return true if XML schema definition of this Class is that of a global\r
-   *         element or element with anonymous type definition.\r
-   */\r
-  public boolean isElementDefinition()\r
-  {\r
-    return _elementDefinition;\r
-  }\r
-\r
-}\r
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2.descriptors;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import jalview.schemabinding.version2.StructureState;
+
+/**
+ * Class StructureStateDescriptor.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class StructureStateDescriptor extends
+        org.exolab.castor.xml.util.XMLClassDescriptorImpl
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _elementDefinition.
+   */
+  private boolean _elementDefinition;
+
+  /**
+   * Field _nsPrefix.
+   */
+  private java.lang.String _nsPrefix;
+
+  /**
+   * Field _nsURI.
+   */
+  private java.lang.String _nsURI;
+
+  /**
+   * Field _xmlName.
+   */
+  private java.lang.String _xmlName;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public StructureStateDescriptor()
+  {
+    super();
+    _nsURI = "www.jalview.org";
+    _xmlName = "structureState";
+    _elementDefinition = true;
+    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
+    org.exolab.castor.mapping.FieldHandler handler = null;
+    org.exolab.castor.xml.FieldValidator fieldValidator = null;
+    // -- _content
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.String.class, "_content", "PCDATA",
+            org.exolab.castor.xml.NodeType.Text);
+    desc.setImmutable(true);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        return target.getContent();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          target.setContent((java.lang.String) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _content
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.StringValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setWhiteSpace("preserve");
+    }
+    desc.setValidator(fieldValidator);
+    // -- initialize attribute descriptors
+
+    // -- _visible
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Boolean.TYPE, "_visible", "visible",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasVisible())
+        {
+          return null;
+        }
+        return (target.getVisible() ? java.lang.Boolean.TRUE
+                : java.lang.Boolean.FALSE);
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteVisible();
+            return;
+          }
+          target.setVisible(((java.lang.Boolean) value).booleanValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _visible
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.BooleanValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _viewId
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.String.class, "_viewId", "viewId",
+            org.exolab.castor.xml.NodeType.Attribute);
+    desc.setImmutable(true);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        return target.getViewId();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          target.setViewId((java.lang.String) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _viewId
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.StringValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setWhiteSpace("preserve");
+    }
+    desc.setValidator(fieldValidator);
+    // -- _alignwithAlignPanel
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Boolean.TYPE, "_alignwithAlignPanel",
+            "alignwithAlignPanel", org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasAlignwithAlignPanel())
+        {
+          return null;
+        }
+        return (target.getAlignwithAlignPanel() ? java.lang.Boolean.TRUE
+                : java.lang.Boolean.FALSE);
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteAlignwithAlignPanel();
+            return;
+          }
+          target.setAlignwithAlignPanel(((java.lang.Boolean) value)
+                  .booleanValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _alignwithAlignPanel
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.BooleanValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _colourwithAlignPanel
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Boolean.TYPE, "_colourwithAlignPanel",
+            "colourwithAlignPanel",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasColourwithAlignPanel())
+        {
+          return null;
+        }
+        return (target.getColourwithAlignPanel() ? java.lang.Boolean.TRUE
+                : java.lang.Boolean.FALSE);
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteColourwithAlignPanel();
+            return;
+          }
+          target.setColourwithAlignPanel(((java.lang.Boolean) value)
+                  .booleanValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _colourwithAlignPanel
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.BooleanValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _colourByJmol
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Boolean.TYPE, "_colourByJmol", "colourByJmol",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasColourByJmol())
+        {
+          return null;
+        }
+        return (target.getColourByJmol() ? java.lang.Boolean.TRUE
+                : java.lang.Boolean.FALSE);
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteColourByJmol();
+            return;
+          }
+          target.setColourByJmol(((java.lang.Boolean) value).booleanValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _colourByJmol
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.BooleanValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _type
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.String.class, "_type", "type",
+            org.exolab.castor.xml.NodeType.Attribute);
+    desc.setImmutable(true);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        return target.getType();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          target.setType((java.lang.String) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _type
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.StringValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setWhiteSpace("preserve");
+    }
+    desc.setValidator(fieldValidator);
+    // -- _width
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Integer.TYPE, "_width", "width",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasWidth())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getWidth());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteWidth();
+            return;
+          }
+          target.setWidth(((java.lang.Integer) value).intValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _width
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.IntValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.IntValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setMinInclusive(-2147483648);
+      typeValidator.setMaxInclusive(2147483647);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _height
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Integer.TYPE, "_height", "height",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasHeight())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getHeight());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteHeight();
+            return;
+          }
+          target.setHeight(((java.lang.Integer) value).intValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _height
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.IntValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.IntValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setMinInclusive(-2147483648);
+      typeValidator.setMaxInclusive(2147483647);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _xpos
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Integer.TYPE, "_xpos", "xpos",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasXpos())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getXpos());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteXpos();
+            return;
+          }
+          target.setXpos(((java.lang.Integer) value).intValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _xpos
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.IntValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.IntValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setMinInclusive(-2147483648);
+      typeValidator.setMaxInclusive(2147483647);
+    }
+    desc.setValidator(fieldValidator);
+    // -- _ypos
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.Integer.TYPE, "_ypos", "ypos",
+            org.exolab.castor.xml.NodeType.Attribute);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        StructureState target = (StructureState) object;
+        if (!target.hasYpos())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getYpos());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          StructureState target = (StructureState) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteYpos();
+            return;
+          }
+          target.setYpos(((java.lang.Integer) value).intValue());
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _ypos
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.IntValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.IntValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setMinInclusive(-2147483648);
+      typeValidator.setMaxInclusive(2147483647);
+    }
+    desc.setValidator(fieldValidator);
+    // -- initialize element descriptors
+
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * Method getAccessMode.
+   * 
+   * @return the access mode specified for this class.
+   */
+  public org.exolab.castor.mapping.AccessMode getAccessMode()
+  {
+    return null;
+  }
+
+  /**
+   * Method getIdentity.
+   * 
+   * @return the identity field, null if this class has no identity.
+   */
+  public org.exolab.castor.mapping.FieldDescriptor getIdentity()
+  {
+    return super.getIdentity();
+  }
+
+  /**
+   * Method getJavaClass.
+   * 
+   * @return the Java class represented by this descriptor.
+   */
+  public java.lang.Class getJavaClass()
+  {
+    return jalview.schemabinding.version2.StructureState.class;
+  }
+
+  /**
+   * Method getNameSpacePrefix.
+   * 
+   * @return the namespace prefix to use when marshaling as XML.
+   */
+  public java.lang.String getNameSpacePrefix()
+  {
+    return _nsPrefix;
+  }
+
+  /**
+   * Method getNameSpaceURI.
+   * 
+   * @return the namespace URI used when marshaling and unmarshaling as XML.
+   */
+  public java.lang.String getNameSpaceURI()
+  {
+    return _nsURI;
+  }
+
+  /**
+   * Method getValidator.
+   * 
+   * @return a specific validator for the class described by this
+   *         ClassDescriptor.
+   */
+  public org.exolab.castor.xml.TypeValidator getValidator()
+  {
+    return this;
+  }
+
+  /**
+   * Method getXMLName.
+   * 
+   * @return the XML Name for the Class being described.
+   */
+  public java.lang.String getXMLName()
+  {
+    return _xmlName;
+  }
+
+  /**
+   * Method isElementDefinition.
+   * 
+   * @return true if XML schema definition of this Class is that of a global
+   *         element or element with anonymous type definition.
+   */
+  public boolean isElementDefinition()
+  {
+    return _elementDefinition;
+  }
+
+}