/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
* \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
+ * This file is part of Jalview.\r
* \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
* \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
package jalview.schemabinding.version2.descriptors;\r
\r
-// ---------------------------------/\r
-// - Imported classes and packages -/\r
-// ---------------------------------/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
\r
import jalview.schemabinding.version2.Viewport;\r
\r
_xmlName = "Viewport";\r
_elementDefinition = true;\r
\r
- // -- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- // -- initialize attribute descriptors\r
+ // -- set grouping compositor\r
+ setCompositorAsSequence();\r
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+ org.exolab.castor.mapping.FieldHandler handler = null;\r
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+ // -- initialize attribute descriptors\r
+\r
+ // -- _conservationSelected\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_conservationSelected",\r
+ "conservationSelected",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasConservationSelected())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getConservationSelected() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteConservationSelected();\r
+ return;\r
+ }\r
+ target.setConservationSelected(((java.lang.Boolean) value)\r
+ .booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _conservationSelected\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _pidSelected\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_pidSelected", "pidSelected",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasPidSelected())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getPidSelected() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deletePidSelected();\r
+ return;\r
+ }\r
+ target.setPidSelected(((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _pidSelected\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _bgColour\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_bgColour", "bgColour",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ return target.getBgColour();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ target.setBgColour((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _bgColour\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _consThreshold\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_consThreshold", "consThreshold",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasConsThreshold())\r
+ {\r
+ return null;\r
+ }\r
+ return new java.lang.Integer(target.getConsThreshold());\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteConsThreshold();\r
+ return;\r
+ }\r
+ target.setConsThreshold(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _consThreshold\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _pidThreshold\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_pidThreshold", "pidThreshold",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasPidThreshold())\r
+ {\r
+ return null;\r
+ }\r
+ return new java.lang.Integer(target.getPidThreshold());\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deletePidThreshold();\r
+ return;\r
+ }\r
+ target.setPidThreshold(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _pidThreshold\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _title\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_title", "title",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ return target.getTitle();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ target.setTitle((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _title\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _showFullId\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_showFullId", "showFullId",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasShowFullId())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getShowFullId() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteShowFullId();\r
+ return;\r
+ }\r
+ target.setShowFullId(((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _showFullId\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _rightAlignIds\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_rightAlignIds", "rightAlignIds",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasRightAlignIds())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getRightAlignIds() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteRightAlignIds();\r
+ return;\r
+ }\r
+ target.setRightAlignIds(((java.lang.Boolean) value)\r
+ .booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _rightAlignIds\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _showText\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_showText", "showText",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasShowText())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getShowText() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteShowText();\r
+ return;\r
+ }\r
+ target.setShowText(((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _showText\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _showColourText\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_showColourText", "showColourText",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasShowColourText())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getShowColourText() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteShowColourText();\r
+ return;\r
+ }\r
+ target.setShowColourText(((java.lang.Boolean) value)\r
+ .booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _showColourText\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _showUnconserved\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_showUnconserved", "showUnconserved",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ if (!target.hasShowUnconserved())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getShowUnconserved() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteShowUnconserved();\r
+ return;\r
+ }\r
+ target.setShowUnconserved(((java.lang.Boolean) value)\r
+ .booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
\r
- // -- _conservationSelected\r
+ // -- validation code for: _showUnconserved\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _showBoxes\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_conservationSelected",\r
- "conservationSelected",\r
+ java.lang.Boolean.TYPE, "_showBoxes", "showBoxes",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasConservationSelected())\r
+ if (!target.hasShowBoxes())\r
{\r
return null;\r
}\r
- return (target.getConservationSelected() ? java.lang.Boolean.TRUE\r
+ return (target.getShowBoxes() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteConservationSelected();\r
+ target.deleteShowBoxes();\r
return;\r
}\r
- target.setConservationSelected(((java.lang.Boolean) value)\r
- .booleanValue());\r
+ target.setShowBoxes(((java.lang.Boolean) value).booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _conservationSelected\r
+ // -- validation code for: _showBoxes\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _pidSelected\r
+ // -- _wrapAlignment\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_pidSelected", "pidSelected",\r
+ java.lang.Boolean.TYPE, "_wrapAlignment", "wrapAlignment",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasPidSelected())\r
+ if (!target.hasWrapAlignment())\r
{\r
return null;\r
}\r
- return (target.getPidSelected() ? java.lang.Boolean.TRUE\r
+ return (target.getWrapAlignment() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deletePidSelected();\r
+ target.deleteWrapAlignment();\r
return;\r
}\r
- target.setPidSelected(((java.lang.Boolean) value).booleanValue());\r
+ target.setWrapAlignment(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _pidSelected\r
+ // -- validation code for: _wrapAlignment\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _bgColour\r
+ // -- _renderGaps\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.String.class, "_bgColour", "bgColour",\r
+ java.lang.Boolean.TYPE, "_renderGaps", "renderGaps",\r
org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
public java.lang.Object getValue(java.lang.Object object)\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- return target.getBgColour();\r
+ if (!target.hasRenderGaps())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getRenderGaps() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
}\r
\r
public void setValue(java.lang.Object object, java.lang.Object value)\r
try\r
{\r
Viewport target = (Viewport) object;\r
- target.setBgColour((java.lang.String) value);\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteRenderGaps();\r
+ return;\r
+ }\r
+ target.setRenderGaps(((java.lang.Boolean) value).booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _bgColour\r
+ // -- validation code for: _renderGaps\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _consThreshold\r
+ // -- _showSequenceFeatures\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Integer.TYPE, "_consThreshold", "consThreshold",\r
+ java.lang.Boolean.TYPE, "_showSequenceFeatures",\r
+ "showSequenceFeatures",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasConsThreshold())\r
+ if (!target.hasShowSequenceFeatures())\r
{\r
return null;\r
}\r
- return new java.lang.Integer(target.getConsThreshold());\r
+ return (target.getShowSequenceFeatures() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
}\r
\r
public void setValue(java.lang.Object object, java.lang.Object value)\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteConsThreshold();\r
+ target.deleteShowSequenceFeatures();\r
return;\r
}\r
- target.setConsThreshold(((java.lang.Integer) value).intValue());\r
+ target.setShowSequenceFeatures(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _consThreshold\r
+ // -- validation code for: _showSequenceFeatures\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _pidThreshold\r
+ // -- _showNPfeatureTooltip\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Integer.TYPE, "_pidThreshold", "pidThreshold",\r
+ java.lang.Boolean.TYPE, "_showNPfeatureTooltip",\r
+ "showNPfeatureTooltip",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasPidThreshold())\r
+ if (!target.hasShowNPfeatureTooltip())\r
{\r
return null;\r
}\r
- return new java.lang.Integer(target.getPidThreshold());\r
+ return (target.getShowNPfeatureTooltip() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
}\r
\r
public void setValue(java.lang.Object object, java.lang.Object value)\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deletePidThreshold();\r
+ target.deleteShowNPfeatureTooltip();\r
return;\r
}\r
- target.setPidThreshold(((java.lang.Integer) value).intValue());\r
+ target.setShowNPfeatureTooltip(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _pidThreshold\r
+ // -- validation code for: _showNPfeatureTooltip\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _title\r
+ // -- _showDbRefTooltip\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.String.class, "_title", "title",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
+ java.lang.Boolean.TYPE, "_showDbRefTooltip",\r
+ "showDbRefTooltip", org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
public java.lang.Object getValue(java.lang.Object object)\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- return target.getTitle();\r
+ if (!target.hasShowDbRefTooltip())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getShowDbRefTooltip() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
}\r
\r
public void setValue(java.lang.Object object, java.lang.Object value)\r
try\r
{\r
Viewport target = (Viewport) object;\r
- target.setTitle((java.lang.String) value);\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteShowDbRefTooltip();\r
+ return;\r
+ }\r
+ target.setShowDbRefTooltip(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _title\r
+ // -- validation code for: _showDbRefTooltip\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showFullId\r
+ // -- _followHighlight\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showFullId", "showFullId",\r
+ java.lang.Boolean.TYPE, "_followHighlight", "followHighlight",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowFullId())\r
+ if (!target.hasFollowHighlight())\r
{\r
return null;\r
}\r
- return (target.getShowFullId() ? java.lang.Boolean.TRUE\r
+ return (target.getFollowHighlight() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowFullId();\r
+ target.deleteFollowHighlight();\r
return;\r
}\r
- target.setShowFullId(((java.lang.Boolean) value).booleanValue());\r
+ target.setFollowHighlight(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showFullId\r
+ // -- validation code for: _followHighlight\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _rightAlignIds\r
+ // -- _followSelection\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_rightAlignIds", "rightAlignIds",\r
+ java.lang.Boolean.TYPE, "_followSelection", "followSelection",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasRightAlignIds())\r
+ if (!target.hasFollowSelection())\r
{\r
return null;\r
}\r
- return (target.getRightAlignIds() ? java.lang.Boolean.TRUE\r
+ return (target.getFollowSelection() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteRightAlignIds();\r
+ target.deleteFollowSelection();\r
return;\r
}\r
- target.setRightAlignIds(((java.lang.Boolean) value)\r
+ target.setFollowSelection(((java.lang.Boolean) value)\r
.booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _rightAlignIds\r
+ // -- validation code for: _followSelection\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showText\r
+ // -- _showAnnotation\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showText", "showText",\r
+ java.lang.Boolean.TYPE, "_showAnnotation", "showAnnotation",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowText())\r
+ if (!target.hasShowAnnotation())\r
{\r
return null;\r
}\r
- return (target.getShowText() ? java.lang.Boolean.TRUE\r
+ return (target.getShowAnnotation() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowText();\r
+ target.deleteShowAnnotation();\r
return;\r
}\r
- target.setShowText(((java.lang.Boolean) value).booleanValue());\r
+ target.setShowAnnotation(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showText\r
+ // -- validation code for: _showAnnotation\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showColourText\r
+ // -- _centreColumnLabels\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showColourText", "showColourText",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
+ java.lang.Boolean.TYPE, "_centreColumnLabels",\r
+ "centreColumnLabels", org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
public java.lang.Object getValue(java.lang.Object object)\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowColourText())\r
+ if (!target.hasCentreColumnLabels())\r
{\r
return null;\r
}\r
- return (target.getShowColourText() ? java.lang.Boolean.TRUE\r
+ return (target.getCentreColumnLabels() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowColourText();\r
+ target.deleteCentreColumnLabels();\r
return;\r
}\r
- target.setShowColourText(((java.lang.Boolean) value)\r
+ target.setCentreColumnLabels(((java.lang.Boolean) value)\r
.booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showColourText\r
+ // -- validation code for: _centreColumnLabels\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showBoxes\r
+ // -- _showGroupConservation\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showBoxes", "showBoxes",\r
+ java.lang.Boolean.TYPE, "_showGroupConservation",\r
+ "showGroupConservation",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowBoxes())\r
+ if (!target.hasShowGroupConservation())\r
{\r
return null;\r
}\r
- return (target.getShowBoxes() ? java.lang.Boolean.TRUE\r
+ return (target.getShowGroupConservation() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowBoxes();\r
+ target.deleteShowGroupConservation();\r
return;\r
}\r
- target.setShowBoxes(((java.lang.Boolean) value).booleanValue());\r
+ target.setShowGroupConservation(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showBoxes\r
+ // -- validation code for: _showGroupConservation\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _wrapAlignment\r
+ // -- _showGroupConsensus\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_wrapAlignment", "wrapAlignment",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
+ java.lang.Boolean.TYPE, "_showGroupConsensus",\r
+ "showGroupConsensus", org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
public java.lang.Object getValue(java.lang.Object object)\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasWrapAlignment())\r
+ if (!target.hasShowGroupConsensus())\r
{\r
return null;\r
}\r
- return (target.getWrapAlignment() ? java.lang.Boolean.TRUE\r
+ return (target.getShowGroupConsensus() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteWrapAlignment();\r
+ target.deleteShowGroupConsensus();\r
return;\r
}\r
- target.setWrapAlignment(((java.lang.Boolean) value)\r
+ target.setShowGroupConsensus(((java.lang.Boolean) value)\r
.booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _wrapAlignment\r
+ // -- validation code for: _showGroupConsensus\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _renderGaps\r
+ // -- _showConsensusHistogram\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_renderGaps", "renderGaps",\r
+ java.lang.Boolean.TYPE, "_showConsensusHistogram",\r
+ "showConsensusHistogram",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasRenderGaps())\r
+ if (!target.hasShowConsensusHistogram())\r
{\r
return null;\r
}\r
- return (target.getRenderGaps() ? java.lang.Boolean.TRUE\r
+ return (target.getShowConsensusHistogram() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteRenderGaps();\r
+ target.deleteShowConsensusHistogram();\r
return;\r
}\r
- target.setRenderGaps(((java.lang.Boolean) value).booleanValue());\r
+ target.setShowConsensusHistogram(((java.lang.Boolean) value)\r
+ .booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
throw new IllegalStateException(ex.toString());\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _renderGaps\r
+ // -- validation code for: _showConsensusHistogram\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showSequenceFeatures\r
+ // -- _showSequenceLogo\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showSequenceFeatures",\r
- "showSequenceFeatures",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
+ java.lang.Boolean.TYPE, "_showSequenceLogo",\r
+ "showSequenceLogo", org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
public java.lang.Object getValue(java.lang.Object object)\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowSequenceFeatures())\r
+ if (!target.hasShowSequenceLogo())\r
{\r
return null;\r
}\r
- return (target.getShowSequenceFeatures() ? java.lang.Boolean.TRUE\r
+ return (target.getShowSequenceLogo() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowSequenceFeatures();\r
+ target.deleteShowSequenceLogo();\r
return;\r
}\r
- target.setShowSequenceFeatures(((java.lang.Boolean) value)\r
+ target.setShowSequenceLogo(((java.lang.Boolean) value)\r
.booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showSequenceFeatures\r
+ // -- validation code for: _showSequenceLogo\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
fieldValidator.setValidator(typeValidator);\r
}\r
desc.setValidator(fieldValidator);\r
- // -- _showAnnotation\r
+ // -- _ignoreGapsinConsensus\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Boolean.TYPE, "_showAnnotation", "showAnnotation",\r
+ java.lang.Boolean.TYPE, "_ignoreGapsinConsensus",\r
+ "ignoreGapsinConsensus",\r
org.exolab.castor.xml.NodeType.Attribute);\r
handler = new org.exolab.castor.xml.XMLFieldHandler()\r
{\r
throws IllegalStateException\r
{\r
Viewport target = (Viewport) object;\r
- if (!target.hasShowAnnotation())\r
+ if (!target.hasIgnoreGapsinConsensus())\r
{\r
return null;\r
}\r
- return (target.getShowAnnotation() ? java.lang.Boolean.TRUE\r
+ return (target.getIgnoreGapsinConsensus() ? java.lang.Boolean.TRUE\r
: java.lang.Boolean.FALSE);\r
}\r
\r
// if null, use delete method for optional primitives\r
if (value == null)\r
{\r
- target.deleteShowAnnotation();\r
+ target.deleteIgnoreGapsinConsensus();\r
return;\r
}\r
- target.setShowAnnotation(((java.lang.Boolean) value)\r
+ target.setIgnoreGapsinConsensus(((java.lang.Boolean) value)\r
.booleanValue());\r
} catch (java.lang.Exception ex)\r
{\r
desc.setMultivalued(false);\r
addFieldDescriptor(desc);\r
\r
- // -- validation code for: _showAnnotation\r
+ // -- validation code for: _ignoreGapsinConsensus\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
{ // -- local scope\r
org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
typeValidator.setMaxInclusive(2147483647);\r
}\r
desc.setValidator(fieldValidator);\r
+ // -- _id\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_id", "id",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ super.setIdentity(desc);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ return target.getId();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ Viewport target = (Viewport) object;\r
+ target.setId((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new java.lang.String();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _id\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IdValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IdValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
// -- initialize element descriptors\r
\r
// -- _annotationColours\r
git://source.jalview.org / jalview.git / blobdiff