JAL-1065 JAL-1066 - use direct object reference rather then index into alignment

[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index c511ded..27b8996 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -20,7 +20,7 @@ package jalview.schemes;
 import jalview.analysis.AAFrequency;
 
 import java.awt.Color;
-
+import jalview.datamodel.SequenceI;
 public class Blosum62ColourScheme extends ResidueColourScheme
 {
   public Blosum62ColourScheme()
@@ -29,7 +29,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
   }
 
   @Override
-  public Color findColour(char res, int j, int sequenceIndex)
+  public Color findColour(char res, int j, SequenceI seq)
   {
     if ('a' <= res && res <= 'z')
     {