JAL-3215 refactored ScoreColourScheme construction for scriptability

[jalview.git] / src / jalview / schemes / BuriedColourScheme.java

diff --git a/src/jalview/schemes/BuriedColourScheme.java b/src/jalview/schemes/BuriedColourScheme.java
index 938417d..b2ef14f 100755 (executable)
--- a/src/jalview/schemes/BuriedColourScheme.java
+++ b/src/jalview/schemes/BuriedColourScheme.java
@@ -26,33 +26,21 @@ import jalview.datamodel.AnnotatedCollectionI;
 import java.awt.Color;
 
 /**
- * DOCUMENT ME!
- * 
- * @author $author$
- * @version $Revision$
+ * A graduated colour scheme based on residue buried index score
  */
 public class BuriedColourScheme extends ScoreColourScheme
 {
-  /**
-   * Creates a new BuriedColourScheme object.
-   */
-  public BuriedColourScheme()
-  {
-    super(ResidueProperties.aaIndex, ResidueProperties.buried);
-  }
+  private static final Color minScoreColour = new Color(0, 255, 0);
+
+  private static final Color maxScoreColour = new Color(0, 0, 255);
 
   /**
-   * DOCUMENT ME!
-   * 
-   * @param c
-   *          DOCUMENT ME!
-   * 
-   * @return DOCUMENT ME!
+   * Constructor
    */
-  @Override
-  public Color makeColour(float c)
+  public BuriedColourScheme()
   {
-    return new Color(0, (float) (1.0 - c), c);
+    super(JalviewColourScheme.Buried.toString(), ResidueProperties.aaIndex,
+            ResidueProperties.buried, minScoreColour, maxScoreColour);
   }
 
   @Override
@@ -61,12 +49,6 @@ public class BuriedColourScheme extends ScoreColourScheme
     return true;
   }
 
-  @Override
-  public String getSchemeName()
-  {
-    return JalviewColourScheme.Buried.toString();
-  }
-
   /**
    * Returns a new instance of this colour scheme with which the given data may
    * be coloured