JAL-1065 JAL-1066 - use direct object reference rather then index into alignment

[jalview.git] / src / jalview / schemes / PIDColourScheme.java

diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java
index c4f7eb5..a64bf20 100755 (executable)
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -19,6 +19,7 @@ package jalview.schemes;
 
 import jalview.analysis.AAFrequency;
 import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
 
@@ -38,7 +39,7 @@ public class PIDColourScheme extends ResidueColourScheme
 
   
   @Override
-  public Color findColour(char c, int j, int sequenceIndex)
+  public Color findColour(char c, int j, SequenceI seq)
   {
     if ('a' <= c && c <= 'z')
     {