JAL-1065 JAL-1066 - use direct object reference rather then index into alignment

[jalview.git] / src / jalview / schemes / ResidueColourScheme.java

diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index cc7f0d8..5c0aa53 100755 (executable)
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -19,6 +19,7 @@ package jalview.schemes;
 
 import jalview.analysis.AAFrequency;
 import jalview.analysis.Conservation;
+import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
 import java.util.Hashtable;
@@ -83,7 +84,7 @@ public class ResidueColourScheme implements ColourSchemeI
   }
 
   @Override
-  public Color findColour(char c, int j, int sequenceIndex)
+  public Color findColour(char c, int j, SequenceI seq)
   {
     Color currentColour;