super(ResidueProperties.aaIndex);
colors = newColors;
}
+
@Override
public ColourSchemeI applyTo(AnnotatedCollectionI sg,
Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
{
UserColourScheme usc = new UserColourScheme(colors);
- if (lowerCaseColours!=null) {
+ if (lowerCaseColours != null)
+ {
usc.schemeName = new String(schemeName);
usc.lowerCaseColours = new Color[lowerCaseColours.length];
- System.arraycopy(lowerCaseColours, 0, usc.lowerCaseColours, 0, lowerCaseColours.length);
+ System.arraycopy(lowerCaseColours, 0, usc.lowerCaseColours, 0,
+ lowerCaseColours.length);
}
return usc;
}
+
public UserColourScheme(String colour)
{
super(ResidueProperties.aaIndex);
public void parseAppletParameter(String paramValue)
{
- // TODO: need a function to generate appletParameter colour string from a UCS
+ // TODO: need a function to generate appletParameter colour string from a
+ // UCS
StringTokenizer st = new StringTokenizer(paramValue, ";");
StringTokenizer st2;
String token = null, colour, residues;