JAL-1761 backbone type parameter for configuring which atoms are used for superpositi...

[jalview.git] / src / jalview / structure / StructureCommandsBase.java

diff --git a/src/jalview/structure/StructureCommandsBase.java b/src/jalview/structure/StructureCommandsBase.java
index 8716691..fdc8d16 100644 (file)
--- a/src/jalview/structure/StructureCommandsBase.java
+++ b/src/jalview/structure/StructureCommandsBase.java
@@ -141,7 +141,7 @@ public abstract class StructureCommandsBase implements StructureCommandsI
   protected StructureCommandI getColourCommand(AtomSpecModel atomSpecModel,
           Color colour)
   {
-    String atomSpec = getAtomSpec(atomSpecModel, false);
+    String atomSpec = getAtomSpec(atomSpecModel, AtomSpecType.RESIDUE_ONLY);
     return colourResidues(atomSpec, colour);
   }