Merge branch 'develop' into feature/JAL-3390hideUnmappedStructure

[jalview.git] / src / jalview / structures / models / AAStructureBindingModel.java

diff --git a/src/jalview/structures/models/AAStructureBindingModel.java b/src/jalview/structures/models/AAStructureBindingModel.java
index 8eea16f..47e7f30 100644 (file)
--- a/src/jalview/structures/models/AAStructureBindingModel.java
+++ b/src/jalview/structures/models/AAStructureBindingModel.java
@@ -1072,7 +1072,7 @@ public abstract class AAStructureBindingModel
    * @param viewPanel
    * @return
    */
-  protected Map<Object, AtomSpecModel> buildColoursMap(
+  public Map<Object, AtomSpecModel> buildColoursMap(
           AlignmentViewPanel viewPanel)
   {
     FeatureRenderer fr = viewPanel.getFeatureRenderer();
@@ -1151,7 +1151,7 @@ public abstract class AAStructureBindingModel
               {
                 if (startPos != -1)
                 {
-                  ChimeraCommands.addMapRange(colourMap, lastColour,
+                  ChimeraCommands.addAtomSpecRange(colourMap, lastColour,
                           pdbfnum, startPos,
                           lastPos, lastChain);
                 }
@@ -1164,7 +1164,8 @@ public abstract class AAStructureBindingModel
             // final colour range
             if (lastColour != null)
             {
-              ChimeraCommands.addMapRange(colourMap, lastColour, pdbfnum,
+              ChimeraCommands.addAtomSpecRange(colourMap, lastColour,
+                      pdbfnum,
                       startPos, lastPos, lastChain);
             }
             // break;