JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / workers / AlignCalcManager.java

diff --git a/src/jalview/workers/AlignCalcManager.java b/src/jalview/workers/AlignCalcManager.java
index 322d999..2fa0553 100644 (file)
--- a/src/jalview/workers/AlignCalcManager.java
+++ b/src/jalview/workers/AlignCalcManager.java
@@ -1,5 +1,29 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.workers;
 
+import jalview.api.AlignCalcManagerI;
+import jalview.api.AlignCalcWorkerI;
+import jalview.datamodel.AlignmentAnnotation;
+
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.HashSet;
@@ -8,10 +32,6 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-import jalview.api.AlignCalcManagerI;
-import jalview.api.AlignCalcWorkerI;
-import jalview.datamodel.AlignmentAnnotation;
-
 public class AlignCalcManager implements AlignCalcManagerI
 {
   private volatile List<AlignCalcWorkerI> restartable = Collections
@@ -236,10 +256,12 @@ public class AlignCalcManager implements AlignCalcManagerI
       for (List<AlignCalcWorkerI> workers : updating.values())
       {
         for (AlignCalcWorkerI worker : workers)
+        {
           if (worker.involves(alignmentAnnotation))
           {
             return true;
           }
+        }
       }
     }
     return false;
@@ -271,7 +293,7 @@ public class AlignCalcManager implements AlignCalcManagerI
     AlignCalcWorkerI[] workers;
     synchronized (canUpdate)
     {
-      workers = canUpdate.toArray(new AlignCalcWorkerI[0]);
+      workers = canUpdate.toArray(new AlignCalcWorkerI[canUpdate.size()]);
     }
     for (AlignCalcWorkerI worker : workers)
     {