JAL-1432 updated copyright notices

[jalview.git] / src / jalview / ws / JobStateSummary.java

diff --git a/src/jalview/ws/JobStateSummary.java b/src/jalview/ws/JobStateSummary.java
index 9d9d61a..13c70d3 100644 (file)
--- a/src/jalview/ws/JobStateSummary.java
+++ b/src/jalview/ws/JobStateSummary.java
@@ -1,19 +1,20 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws;
 
@@ -109,9 +110,7 @@ public class JobStateSummary
       {
         serror++;
         j.subjobComplete = true;
-        wsInfo
-                .setStatus(j.jobnum,
-                        WebserviceInfo.STATE_STOPPED_SERVERERROR);
+        wsInfo.setStatus(j.jobnum, WebserviceInfo.STATE_STOPPED_SERVERERROR);
       }
       else if (j.isBroken())
       {
@@ -121,14 +120,27 @@ public class JobStateSummary
         wsInfo.setStatus(j.jobnum, WebserviceInfo.STATE_STOPPED_ERROR);
       }
       // and pass on any sub-job messages to the user
-      wsInfo.setProgressText(j.jobnum, OutputHeader);
-      wsInfo.appendProgressText(j.jobnum, progheader);
+      StringBuffer output = new StringBuffer();
+      if (OutputHeader != null)
+      {
+
+        output.append(OutputHeader);
+      }
+      if (progheader != null)
+      {
+        output.append(progheader);
+      }
       if (j.hasStatus())
       {
-        // Could try to squash OOMs here, but it usually doesn't help - there probably won't be
+        // Could try to squash OOMs here, but it usually doesn't help - there
+        // probably won't be
         // enough memory to handle the results later on anyway.
         // try {
-        wsInfo.appendProgressText(j.jobnum, j.getStatus());
+        String stat = j.getStatus();
+        if (stat != null)
+        {
+          output.append(stat);
+        }
         // } catch (OutOfMemoryError e)
         // {
         // System.err.println("Out of memory when displaying status. Squashing error.");
@@ -136,6 +148,7 @@ public class JobStateSummary
         // "..\n(Out of memory when displaying status)\n");
         // }
       }
+      wsInfo.setProgressText(j.jobnum, output.toString());
     }
     else
     {