3253-omnibus save

[jalview.git] / src / jalview / ws / dbsources / EmblXmlSource.java

diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java
index b03fc71..19366e0 100644 (file)
--- a/src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/src/jalview/ws/dbsources/EmblXmlSource.java
@@ -40,6 +40,7 @@ import jalview.ws.ebi.EBIFetchClient;
 import jalview.xml.binding.embl.EntryType;
 import jalview.xml.binding.embl.EntryType.Feature;
 import jalview.xml.binding.embl.EntryType.Feature.Qualifier;
+import jalview.xml.binding.jalview.JalviewModel;
 import jalview.xml.binding.embl.ROOT;
 import jalview.xml.binding.embl.XrefType;
 
@@ -53,7 +54,6 @@ import java.util.Hashtable;
 import java.util.List;
 import java.util.Map;
 import java.util.Map.Entry;
-import java.util.regex.Pattern;
 
 import javax.xml.bind.JAXBContext;
 import javax.xml.bind.JAXBElement;
@@ -70,8 +70,6 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
    */
   private static final String EMBL_NOT_FOUND_REPLY = "ERROR 12 No entries found.";
 
-  private static final Pattern SPACE_PATTERN = Pattern.compile(" ");
-
   public EmblXmlSource()
   {
     super();
@@ -652,8 +650,6 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
   
     try
     {
-      // BH 2019.10.06 note: exo-location of "X53828.1:60..1058" causes
-      // RemoteFormatTest to fail at this point.
       List<int[]> ranges = DnaUtils.parseLocation(location);
       return listToArray(ranges);
     } catch (ParseException e)
@@ -707,19 +703,10 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
     SequenceFeature sf = new SequenceFeature(type, desc, begin, end, group);
     if (!vals.isEmpty())
     {
-      StringBuilder sb = new StringBuilder();
-      boolean first = true;
       for (Entry<String, String> val : vals.entrySet())
       {
-        if (!first)
-        {
-          sb.append(";");
-        }
-        sb.append(val.getKey()).append("=").append(val.getValue());
-        first = false;
         sf.setValue(val.getKey(), val.getValue());
       }
-      sf.setAttributes(sb.toString());
     }
     return sf;
   }