JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / ws / dbsources / Rfam.java

diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java
index 2842b82..842090d 100644 (file)
--- a/src/jalview/ws/dbsources/Rfam.java
+++ b/src/jalview/ws/dbsources/Rfam.java
@@ -1,26 +1,29 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws.dbsources;
 
-import com.stevesoft.pat.Regex;
-
 import jalview.ws.seqfetcher.DbSourceProxy;
 
+import com.stevesoft.pat.Regex;
+
 /**
  * Contains methods for fetching sequences from Rfam database
  * 
@@ -34,6 +37,7 @@ abstract public class Rfam extends Xfam implements DbSourceProxy
     super();
     // all extensions of this RFAM source base class are DOMAINDB sources
     addDbSourceProperty(jalview.datamodel.DBRefSource.DOMAINDB);
+    addDbSourceProperty(jalview.datamodel.DBRefSource.ALIGNMENTDB);
   }
 
   /*
@@ -83,7 +87,8 @@ abstract public class Rfam extends Xfam implements DbSourceProxy
     return null;
   }
 
-  /**Returns base URL for selected Rfam alignment type
+  /**
+   * Returns base URL for selected Rfam alignment type
    * 
    * @return RFAM URL stub for this DbSource
    */
@@ -100,7 +105,9 @@ abstract public class Rfam extends Xfam implements DbSourceProxy
     return accession.indexOf("RF") == 0;
   }
 
-  /* (non-Javadoc)
+  /*
+   * (non-Javadoc)
+   * 
    * @see jalview.ws.dbsources.Xfam#getXfamSource()
    */
   public String getXfamSource()