JAL-2089 patch broken merge to master for Release 2.10.0b1

[jalview.git] / src / jalview / ws / dbsources / RfamFull.java

diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java
index bddcc0c..e6fc8ff 100644 (file)
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,15 +20,13 @@
  */
 package jalview.ws.dbsources;
 
-import jalview.ws.seqfetcher.DbSourceProxy;
-
 /**
  * Flyweight class specifying retrieval of Full family alignments from RFAM
  * 
  * @author Lauren Michelle Lui
  * 
  */
-public class RfamFull extends Rfam implements DbSourceProxy
+public class RfamFull extends Rfam
 {
   public RfamFull()
   {
@@ -40,9 +38,11 @@ public class RfamFull extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.dbsources.Rfam#getXFAMURL()
    */
+  @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
+    return "http://rfam.xfam.org/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
+
   }
 
   /*
@@ -50,16 +50,19 @@ public class RfamFull extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
    */
+  @Override
   public String getDbName()
   {
     return "RFAM (Full)";
   }
 
+  @Override
   public String getDbSource()
   {
     return getDbName(); // so we have unique DbSource string.
   }
 
+  @Override
   public String getTestQuery()
   {
     // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
@@ -68,6 +71,7 @@ public class RfamFull extends Rfam implements DbSourceProxy
     return "RF00014";
   }
 
+  @Override
   public String getDbVersion()
   {
     return null;