JAL-3615 used gzip endpoints for Pfam and Rfam

[jalview.git] / src / jalview / ws / dbsources / RfamSeed.java

diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index ab30a85..eaa574b 100644 (file)
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,31 +20,23 @@
  */
 package jalview.ws.dbsources;
 
-import jalview.ws.seqfetcher.DbSourceProxy;
-
 /**
  * Flyweight class specifying retrieval of Seed family alignments from RFAM
  * 
  * @author Lauren Michelle Lui
  * 
  */
-public class RfamSeed extends Rfam implements DbSourceProxy
+public class RfamSeed extends Rfam
 {
   public RfamSeed()
   {
     super();
   }
 
-  /*
-   * (non-Javadoc)
-   * 
-   * @see jalview.ws.dbsources.Rfam#getRFAMURL()
-   */
-  protected String getXFAMURL()
+  @Override
+  public String getURLSuffix()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
-    // Janelia Farms url
-    // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
+    return "/alignment/stockholm" + GZIPPED;
   }
 
   /*
@@ -52,21 +44,25 @@ public class RfamSeed extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
    */
+  @Override
   public String getDbName()
   {
     return "RFAM (Seed)";
   }
 
+  @Override
   public String getDbSource()
   {
     return getDbName(); // so we have unique DbSource string.
   }
 
+  @Override
   public String getTestQuery()
   {
     return "RF00014";
   } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
 
+  @Override
   public String getDbVersion()
   {
     return null;