JAL-3949 Complete new abstracted logging framework in jalview.log. Updated log calls...

[jalview.git] / src / jalview / ws / jws1 / Discoverer.java

diff --git a/src/jalview/ws/jws1/Discoverer.java b/src/jalview/ws/jws1/Discoverer.java
index bee9fad..9f11064 100644 (file)
--- a/src/jalview/ws/jws1/Discoverer.java
+++ b/src/jalview/ws/jws1/Discoverer.java
@@ -20,6 +20,7 @@
  */
 package jalview.ws.jws1;
 
+import jalview.bin.Cache;
 import jalview.gui.JvOptionPane;
 import jalview.util.MessageManager;
 
@@ -98,7 +99,7 @@ public class Discoverer implements Runnable
       // timeout
     } catch (Exception ex)
     {
-      jalview.bin.Cache.log.error(
+      Cache.error(
               "Serious!  Service location failed\nfor URL :" + WsURL + "\n",
               ex);
 
@@ -126,7 +127,7 @@ public class Discoverer implements Runnable
   static private Vector<URL> getDiscoveryURLS()
   {
     Vector<URL> urls = new Vector<>();
-    String RootServiceURLs = jalview.bin.Cache.getDefault("DISCOVERY_URLS",
+    String RootServiceURLs = Cache.getDefault("DISCOVERY_URLS",
             "http://www.compbio.dundee.ac.uk/JalviewWS/services/ServiceRegistry");
 
     try
@@ -144,23 +145,21 @@ public class Discoverer implements Runnable
           }
           else
           {
-            jalview.bin.Cache.log
-                    .info("Ignoring duplicate url in DISCOVERY_URLS list");
+            Cache.info("Ignoring duplicate url in DISCOVERY_URLS list");
           }
         } catch (Exception ex)
         {
-          jalview.bin.Cache.log
-                  .warn("Problem whilst trying to make a URL from '"
+          Cache.warn("Problem whilst trying to make a URL from '"
                           + ((url != null) ? url : "<null>") + "'");
-          jalview.bin.Cache.log.warn(
+          Cache.warn(
                   "This was probably due to a malformed comma separated list"
                           + " in the DISCOVERY_URLS entry of $(HOME)/.jalview_properties)");
-          jalview.bin.Cache.log.debug("Exception was ", ex);
+          Cache.debug("Exception was ", ex);
         }
       }
     } catch (Exception ex)
     {
-      jalview.bin.Cache.log.warn(
+      Cache.warn(
               "Error parsing comma separated list of urls in DISCOVERY_URLS.",
               ex);
     }
@@ -176,11 +175,10 @@ public class Discoverer implements Runnable
    */
   static public void doDiscovery()
   {
-    jalview.bin.Cache.log
-            .debug("(Re)-Initialising the discovery URL list.");
+    Cache.debug("(Re)-Initialising the discovery URL list.");
     try
     {
-      reallyDiscoverServices = jalview.bin.Cache
+      reallyDiscoverServices = Cache
               .getDefault("DISCOVERY_START", false);
       if (reallyDiscoverServices)
       {
@@ -188,7 +186,7 @@ public class Discoverer implements Runnable
       }
       else
       {
-        jalview.bin.Cache.log.debug("Setting default services");
+        Cache.debug("Setting default services");
         services = new Hashtable<>();
         // Muscle, Clustal and JPred.
         ServiceHandle[] defServices = { new ServiceHandle("MsaWS",
@@ -239,7 +237,7 @@ public class Discoverer implements Runnable
     ServiceHandles shs = null;
     try
     {
-      jalview.bin.Cache.log.debug("Discovering services using " + location);
+      Cache.debug("Discovering services using " + location);
       shs = locateWebService(location).getServices();
     } catch (org.apache.axis.AxisFault f)
     {
@@ -257,13 +255,13 @@ public class Discoverer implements Runnable
       }
       else
       {
-        jalview.bin.Cache.log.warn("No Discovery service at " + location);
-        jalview.bin.Cache.log.debug("Axis Fault", f);
+        Cache.warn("No Discovery service at " + location);
+        Cache.debug("Axis Fault", f);
       }
     } catch (Exception e)
     {
-      jalview.bin.Cache.log.warn("No Discovery service at " + location);
-      jalview.bin.Cache.log.debug("Discovery Service General Exception", e);
+      Cache.warn("No Discovery service at " + location);
+      Cache.debug("Discovery Service General Exception", e);
     }
     if ((shs != null) && shs.getServices().length > 0)
     {
@@ -293,7 +291,7 @@ public class Discoverer implements Runnable
     {
       if (!cat.contains(sh[i]))
       {
-        jalview.bin.Cache.log.debug("A " + sh[i].getAbstractName()
+        Cache.debug("A " + sh[i].getAbstractName()
                 + " service called " + sh[i].getName() + " exists at "
                 + sh[i].getEndpointURL() + "\n");
         if (!sscat.containsKey(sh[i].getAbstractName()))
@@ -315,15 +313,14 @@ public class Discoverer implements Runnable
               disc_serv = new java.net.URL(sh[i].getEndpointURL());
               if (!ServiceURLList.contains(disc_serv))
               {
-                jalview.bin.Cache.log.debug(
+                Cache.debug(
                         "Adding new discovery service at " + disc_serv);
                 ServiceURLList.add(disc_serv);
                 seenNewDiscovery = true;
               }
             } catch (Exception e)
             {
-              jalview.bin.Cache.log
-                      .debug("Ignoring bad discovery service URL "
+              Cache.debug("Ignoring bad discovery service URL "
                               + sh[i].getEndpointURL(), e);
             }
           }
@@ -341,8 +338,7 @@ public class Discoverer implements Runnable
     int s_url = 0;
     if (ServiceURLList == null)
     {
-      jalview.bin.Cache.log
-              .debug("No service endpoints to use for service discovery.");
+      Cache.debug("No service endpoints to use for service discovery.");
       return;
     }
     while (s_url < ServiceURLList.size())
@@ -355,7 +351,7 @@ public class Discoverer implements Runnable
       }
       else
       {
-        jalview.bin.Cache.log.warn("No services at "
+        Cache.warn("No services at "
                 + (ServiceURLList.get(s_url))
                 + " - check DISCOVERY_URLS property in .jalview_properties");
       }