/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws.jws2;
+import jalview.util.MessageManager;
+import jalview.ws.jws2.dm.JabaOption;
+import jalview.ws.jws2.dm.JabaParameter;
+import jalview.ws.jws2.dm.JabaWsParamSet;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParamManager;
+import jalview.ws.params.WsParamSetI;
+
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.StringTokenizer;
-import org.jmol.util.ArrayUtil;
import compbio.metadata.Argument;
import compbio.metadata.Option;
import compbio.metadata.Parameter;
import compbio.metadata.PresetManager;
import compbio.metadata.RunnerConfig;
-import jalview.ws.jws2.dm.JabaOption;
-import jalview.ws.jws2.dm.JabaParameter;
-import jalview.ws.jws2.dm.JabaWsParamSet;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.ArgumentI;
-import jalview.ws.params.ParamDatastoreI;
-import jalview.ws.params.ParamManager;
-import jalview.ws.params.WsParamSetI;
-
public class JabaParamStore implements ParamDatastoreI
{
}
if (narg == null)
{
- throw new Error(
- "Implementation Error: Cannot handle Jaba parameter object "
- + rg.getClass());
+ throw new Error(MessageManager.formatMessage(
+ "error.implementation_error_cannot_handle_jaba_param",
+ new String[] { rg.getClass().toString() }));
}
else
{
String[] rgssorton = rgnames.toArray(new String[rgs.size()]);
jalview.util.QuickSort.sort(rgssorton, rgssort);
ArgumentI tmp1;
- int i=0;
- while (rgssort.length-i>i)
+ int i = 0;
+ while (rgssort.length - i > i)
{
- tmp1=rgssort[rgssort.length-i-1];
- rgssort[rgssort.length-i-1] = rgssort[i];
- rgssort[i++]=tmp1;
+ tmp1 = rgssort[rgssort.length - i - 1];
+ rgssort[rgssort.length - i - 1] = rgssort[i];
+ rgssort[i++] = tmp1;
}
return Arrays.asList(rgssort);
}
.getOption() : null;
if (narg == null)
{
- throw new Error(
- "Implementation Error: Cannot handle Jaba parameter object "
- + rg.getClass());
+ throw new Error(MessageManager.formatMessage(
+ "error.implementation_error_cannot_handle_jaba_param",
+ new String[] { rg.getClass().toString() }));
}
else
{
if (servicePresets.containsKey(name))
{
throw new Error(
- "Implementation error: Attempt to delete a service preset!");
+ MessageManager
+ .getString("error.implementation_error_attempt_to_delete_service_preset"));
}
}
List<ArgumentI> jobParams)
{
JabaWsParamSet jps = new JabaWsParamSet(presetName, text, jobParams);
- jps.setApplicableUrls(new String[]
- { service.getUri() });
+ jps.setApplicableUrls(new String[] { service.getUri() });
editedParams.put(jps.getName(), jps);
if (manager != null)
{
: getPreset(presetName));
if (jps == null)
{
- throw new Error("Implementation error: Can't locate either oldname ("
- + oldName + ") or presetName (" + presetName
- + "in the datastore!");
+ throw new Error(
+ MessageManager
+ .formatMessage(
+ "error.implementation_error_cannot_locate_oldname_presetname",
+ new String[] { oldName, presetName }));
}
jps.setName(presetName);
jps.setDescription(text);
jps.setArguments(jobParams);
- jps.setApplicableUrls(new String[]
- { service.getUri() });
+ jps.setApplicableUrls(new String[] { service.getUri() });
if (oldName != null && !oldName.equals(jps.getName()))
{
editedParams.remove(oldName);
if (!involves(urls))
{
throw new IOException(
- "Implementation error: Cannot find service url in the given url set!");
+ MessageManager
+ .getString("error.implementation_error_cannot_find_service_url_in_given_set"));
}
JabaWsParamSet wsp = new JabaWsParamSet();
if (!involves(pset.getApplicableUrls()))
{
throw new IOException(
- "Implementation error: Cannot find service url in the given url set for this service parameter store ("
- + service.getUri() + ") !");
-
+ MessageManager
+ .formatMessage(
+ "error.implementation_error_cannot_find_service_url_in_given_set_param_store",
+ new String[] { service.getUri() }));
}
if (!(pset instanceof JabaWsParamSet))
{
throw new Error(
- "Implementation error: JabaWsParamSets can only be handled by JabaParamStore");
+ MessageManager
+ .getString("error.implementation_error_jabaws_param_set_only_handled_by"));
}
StringBuffer rslt = new StringBuffer();
git://source.jalview.org / jalview.git / blobdiff