JAL-2714 HMMSearch cutoff by E-Value, Score or None

[jalview.git] / src / jalview / ws / params / simple / LogarithmicParameter.java

diff --git a/src/jalview/ws/params/simple/LogarithmicParameter.java b/src/jalview/ws/params/simple/LogarithmicParameter.java
index 01744e7..af80181 100644 (file)
--- a/src/jalview/ws/params/simple/LogarithmicParameter.java
+++ b/src/jalview/ws/params/simple/LogarithmicParameter.java
@@ -17,8 +17,6 @@ public class LogarithmicParameter extends Option implements ParameterI
 
   final double max;
 
-  final double base; // todo is this even needed?
-
   @Override
   public ValueConstrainI getValidValue()
   {
@@ -51,31 +49,27 @@ public class LogarithmicParameter extends Option implements ParameterI
     max = parm.max;
     min = parm.min;
     defval = 0D;
-    base = parm.base;
   }
 
   public LogarithmicParameter(String name, String description,
-          boolean required, Double defValue, double min, double max,
-          double base)
+          boolean required, Double defValue, double min, double max)
   {
     super(name, description, required, String.valueOf(defValue), null, null,
             null);
     defval = defValue;
     this.min = min;
     this.max = max;
-    this.base = base;
   }
 
   public LogarithmicParameter(String name, String description,
           boolean required, Double defValue, double value, double min,
-          double max, double base)
+          double max)
   {
     super(name, description, required, String.valueOf(defValue),
             String.valueOf(value), null, null);
     defval = defValue;
     this.min = min;
     this.max = max;
-    this.base = base;
   }
 
   @Override
@@ -83,9 +77,4 @@ public class LogarithmicParameter extends Option implements ParameterI
   {
     return new LogarithmicParameter(this);
   }
-
-  public double getBase()
-  {
-    return base;
-  }
 }