JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / ws / rest / params / SeqGroupIndexVector.java

diff --git a/src/jalview/ws/rest/params/SeqGroupIndexVector.java b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index 2479e76..6bc208b 100644 (file)
--- a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -53,8 +53,7 @@ public class SeqGroupIndexVector extends InputType implements
 {
   public SeqGroupIndexVector()
   {
-    super(new Class[]
-    { AlignmentI.class });
+    super(new Class[] { AlignmentI.class });
   }
 
   /**
@@ -100,7 +99,12 @@ public class SeqGroupIndexVector extends InputType implements
       {
         if (sg.getSize() < minsize)
         {
-          throw new NoValidInputDataException(MessageManager.formatMessage("exception.notvaliddata_group_contains_less_than_min_seqs", new String[]{Integer.valueOf(minsize).toString()}));
+          throw new NoValidInputDataException(
+                  MessageManager
+                          .formatMessage(
+                                  "exception.notvaliddata_group_contains_less_than_min_seqs",
+                                  new String[] { Integer.valueOf(minsize)
+                                          .toString() }));
         }
         // TODO: refactor to sequenceGroup for efficiency -
         // getAlignmentRowInterval(AlignmentI al)
@@ -118,8 +122,7 @@ public class SeqGroupIndexVector extends InputType implements
           }
           if (se == null)
           {
-            se = new int[]
-            { p, p };
+            se = new int[] { p, p };
           }
           else
           {
@@ -141,19 +144,16 @@ public class SeqGroupIndexVector extends InputType implements
     {
       if (lowest - 1 > minsize)
       {
-        gl.add(0, new int[]
-        { 0, lowest - 2 });
+        gl.add(0, new int[] { 0, lowest - 2 });
       }
       if ((al.getHeight() - 1 - highest) > minsize)
       {
-        gl.add(new int[]
-        { highest + 1, al.getHeight() - 1 });
+        gl.add(new int[] { highest + 1, al.getHeight() - 1 });
       }
     }
     else
     {
-      gl.add(new int[]
-      { 0, al.getHeight() - 1 });
+      gl.add(new int[] { 0, al.getHeight() - 1 });
     }
     if (min >= 0 && gl.size() < min)
     {
@@ -279,8 +279,8 @@ public class SeqGroupIndexVector extends InputType implements
     List<OptionI> lst = getBaseOptions();
     lst.add(new Option("sep",
             "Separator character between elements of vector", true, ",",
-            sep, Arrays.asList(new String[]
-            { " ", ",", ";", "\t", "|" }), null));
+            sep, Arrays.asList(new String[] { " ", ",", ";", "\t", "|" }),
+            null));
     lst.add(new IntegerParameter("minsize",
             "Minimum size of partition allowed by service", true, 1,
             minsize, 1, 0));