package jalview.ws.sifts;
import jalview.analysis.AlignSeq;
-import jalview.analysis.scoremodels.PairwiseSeqScoreModel;
+import jalview.analysis.scoremodels.ScoreMatrix;
import jalview.analysis.scoremodels.ScoreModels;
import jalview.api.DBRefEntryI;
import jalview.api.SiftsClientI;
output.append(String.valueOf(pdbEnd));
output.append(NEWLINE).append(NEWLINE);
- PairwiseSeqScoreModel pam250 = ScoreModels.getInstance().getPam250();
+ ScoreMatrix pam250 = ScoreModels.getInstance().getPam250();
int matchedSeqCount = 0;
for (int j = 0; j < nochunks; j++)
{