JAL-1919 code improvement to make PDB sequence fetcher file format configurable....

[jalview.git] / src / jalview / ws / sifts / SiftsClient.java

diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java
index d30482f..ef6df43 100644 (file)
--- a/src/jalview/ws/sifts/SiftsClient.java
+++ b/src/jalview/ws/sifts/SiftsClient.java
@@ -26,6 +26,7 @@ import jalview.api.SiftsClientI;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.SequenceI;
+import jalview.io.StructureFile;
 import jalview.schemes.ResidueProperties;
 import jalview.structure.StructureMapping;
 import jalview.util.Format;
@@ -77,7 +78,7 @@ public class SiftsClient implements SiftsClientI
 {
   private Entry siftsEntry;
 
-  private PDBfile pdb;
+  private StructureFile pdb;
 
   private String pdbId;
 
@@ -147,7 +148,7 @@ public class SiftsClient implements SiftsClientI
    * @param pdbId
    * @throws SiftsException
    */
-  public SiftsClient(PDBfile pdb) throws SiftsException
+  public SiftsClient(StructureFile pdb) throws SiftsException
   {
     this.pdb = pdb;
     this.pdbId = pdb.getId();