JAL-3878 Add dataset and viewport arguments to ResultSupplier.

[jalview.git] / src / jalview / ws2 / operations / AlignmentOperation.java

diff --git a/src/jalview/ws2/operations/AlignmentOperation.java b/src/jalview/ws2/operations/AlignmentOperation.java
index f836c91..b70678a 100644 (file)
--- a/src/jalview/ws2/operations/AlignmentOperation.java
+++ b/src/jalview/ws2/operations/AlignmentOperation.java
@@ -302,6 +302,8 @@ public class AlignmentOperation implements Operation
 
     private final AlignmentI dataset;
 
+    private final AlignViewport viewport;
+
     private final List<AlignedCodonFrame> codonFrame = new ArrayList<>();
 
     private List<ArgumentI> args = Collections.emptyList();
@@ -337,6 +339,7 @@ public class AlignmentOperation implements Operation
       this.alnTitle = alnTitle;
       this.submitGaps = submitGaps;
       this.preserveOrder = preserveOrder;
+      this.viewport = viewport;
       this.gapCharacter = viewport.getGapCharacter();
 
       String panelInfo = String.format("%s using service hosted at %s%n%s",
@@ -528,7 +531,7 @@ public class AlignmentOperation implements Operation
           continue;
         try
         {
-          AlignmentI alignment = supplier.getResult(job);
+          AlignmentI alignment = supplier.getResult(job, dataset.getSequences(), viewport);
           if (alignment != null)
           {
             results.put(job.getUid(), alignment);