import jalview.bin.Cache;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
+import jalview.io.AnnotationFile;
import jalview.io.DataSourceType;
+import jalview.io.FeaturesFile;
import jalview.io.FileFormat;
import jalview.io.FileFormatI;
import jalview.io.FormatAdapter;
return null;
}
+ public FeaturesFile getFeaturesFile(WSJob job) throws IOException
+ {
+ var slivkaJob = client.getJob(job.getJobId());
+ Collection<RemoteFile> files = slivkaJob.getResults();
+ for (RemoteFile f : files)
+ {
+ if (f.getMediaType().equals("application/jalview-features"))
+ {
+ return new FeaturesFile(f.getContentUrl().toString(), DataSourceType.URL);
+ }
+ }
+ return null;
+ }
+
+ public AnnotationFile getAnnotationFile(WSJob job) throws IOException
+ {
+ var slivkaJob = client.getJob(job.getJobId());
+ Collection<RemoteFile> files = slivkaJob.getResults();
+ for (RemoteFile f : files)
+ {
+ if (f.getMediaType().equals("application/jalview-annotations"))
+ {
+ // return new AnnorationFile(...);
+ }
+ }
+ return null;
+ }
+
@Override
public String toString()
{