// Generated on: 2023.11.01 at 07:03:09 PM GMT
//
-
package jalview.xml.binding.jalview;
import java.math.BigInteger;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;
-
/**
- * Represents matrix data imported to Jalview, and the
- * results of any derived calculations (independent of a particular
- * view
- * on the matrix).
- *
+ * Represents matrix data imported to Jalview, and the results of any derived
+ * calculations (independent of a particular view on the matrix).
+ *
*
* <p>Java class for MatrixType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content
+ * contained within this class.
*
- * <pre>
- * &lt;complexType name="MatrixType"&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
- * &lt;element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" /&gt;
- * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
+ * <pre> &lt;complexType name="MatrixType"&gt;
+ * &lt;complexContent&gt; &lt;restriction
+ * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt; &lt;element name="elements"
+ * type="{http://www.w3.org/2001/XMLSchema}string"/&gt; &lt;element
+ * name="groups" type="{http://www.w3.org/2001/XMLSchema}string"
+ * maxOccurs="unbounded" minOccurs="0"/&gt; &lt;element name="newick"
+ * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"
+ * minOccurs="0"/&gt; &lt;element name="property"
+ * type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded"
+ * minOccurs="0"/&gt; &lt;/sequence&gt; &lt;attribute
+ * name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string"
+ * /&gt; &lt;attribute name="rows" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}integer" /&gt; &lt;attribute
+ * name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer"
+ * /&gt; &lt;attribute name="treeMethod"
+ * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; &lt;attribute
+ * name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" /&gt;
+ * &lt;attribute name="id" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt; &lt;/complexContent&gt;
+ * &lt;/complexType&gt; </pre>
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "MatrixType", propOrder = {
- "elements",
- "groups",
- "newick",
- "property"
-})
-public class MatrixType {
+@XmlType(
+ name = "MatrixType",
+ propOrder =
+ { "elements", "groups", "newick", "property" })
+public class MatrixType
+{
- @XmlElement(required = true)
- protected String elements;
- protected List<String> groups;
- protected List<String> newick;
- protected List<Property> property;
- @XmlAttribute(name = "type", required = true)
- protected String type;
- @XmlAttribute(name = "rows", required = true)
- protected BigInteger rows;
- @XmlAttribute(name = "cols", required = true)
- protected BigInteger cols;
- @XmlAttribute(name = "treeMethod")
- protected String treeMethod;
- @XmlAttribute(name = "cutHeight")
- protected Double cutHeight;
- @XmlAttribute(name = "id", required = true)
- protected String id;
+ @XmlElement(required = true)
+ protected String elements;
- /**
- * Gets the value of the elements property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getElements() {
- return elements;
- }
+ protected List<String> groups;
- /**
- * Sets the value of the elements property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setElements(String value) {
- this.elements = value;
- }
+ protected List<String> newick;
- /**
- * Gets the value of the groups property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the groups property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getGroups().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
- *
- *
- */
- public List<String> getGroups() {
- if (groups == null) {
- groups = new ArrayList<String>();
- }
- return this.groups;
- }
+ protected List<Property> property;
- /**
- * Gets the value of the newick property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the newick property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getNewick().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
- *
- *
- */
- public List<String> getNewick() {
- if (newick == null) {
- newick = new ArrayList<String>();
- }
- return this.newick;
- }
+ @XmlAttribute(name = "type", required = true)
+ protected String type;
- /**
- * Gets the value of the property property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the property property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getProperty().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Property }
- *
- *
- */
- public List<Property> getProperty() {
- if (property == null) {
- property = new ArrayList<Property>();
- }
- return this.property;
- }
+ @XmlAttribute(name = "rows", required = true)
+ protected BigInteger rows;
- /**
- * Gets the value of the type property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getType() {
- return type;
- }
+ @XmlAttribute(name = "cols", required = true)
+ protected BigInteger cols;
- /**
- * Sets the value of the type property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setType(String value) {
- this.type = value;
- }
+ @XmlAttribute(name = "treeMethod")
+ protected String treeMethod;
- /**
- * Gets the value of the rows property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getRows() {
- return rows;
- }
+ @XmlAttribute(name = "cutHeight")
+ protected Double cutHeight;
- /**
- * Sets the value of the rows property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setRows(BigInteger value) {
- this.rows = value;
- }
+ @XmlAttribute(name = "id", required = true)
+ protected String id;
- /**
- * Gets the value of the cols property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getCols() {
- return cols;
- }
+ /**
+ * Gets the value of the elements property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getElements()
+ {
+ return elements;
+ }
- /**
- * Sets the value of the cols property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setCols(BigInteger value) {
- this.cols = value;
- }
+ /**
+ * Sets the value of the elements property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setElements(String value)
+ {
+ this.elements = value;
+ }
- /**
- * Gets the value of the treeMethod property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getTreeMethod() {
- return treeMethod;
+ /**
+ * Gets the value of the groups property.
+ *
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the groups property.
+ *
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getGroups().add(newItem); </pre>
+ *
+ *
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
+ *
+ */
+ public List<String> getGroups()
+ {
+ if (groups == null)
+ {
+ groups = new ArrayList<String>();
}
+ return this.groups;
+ }
- /**
- * Sets the value of the treeMethod property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setTreeMethod(String value) {
- this.treeMethod = value;
+ /**
+ * Gets the value of the newick property.
+ *
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the newick property.
+ *
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getNewick().add(newItem); </pre>
+ *
+ *
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
+ *
+ */
+ public List<String> getNewick()
+ {
+ if (newick == null)
+ {
+ newick = new ArrayList<String>();
}
+ return this.newick;
+ }
- /**
- * Gets the value of the cutHeight property.
- *
- * @return
- * possible object is
- * {@link Double }
- *
- */
- public Double getCutHeight() {
- return cutHeight;
+ /**
+ * Gets the value of the property property.
+ *
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the property property.
+ *
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getProperty().add(newItem); </pre>
+ *
+ *
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link Property }
+ *
+ *
+ */
+ public List<Property> getProperty()
+ {
+ if (property == null)
+ {
+ property = new ArrayList<Property>();
}
+ return this.property;
+ }
- /**
- * Sets the value of the cutHeight property.
- *
- * @param value
- * allowed object is
- * {@link Double }
- *
- */
- public void setCutHeight(Double value) {
- this.cutHeight = value;
- }
+ /**
+ * Gets the value of the type property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getType()
+ {
+ return type;
+ }
- /**
- * Gets the value of the id property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getId() {
- return id;
- }
+ /**
+ * Sets the value of the type property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setType(String value)
+ {
+ this.type = value;
+ }
- /**
- * Sets the value of the id property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setId(String value) {
- this.id = value;
- }
+ /**
+ * Gets the value of the rows property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getRows()
+ {
+ return rows;
+ }
+
+ /**
+ * Sets the value of the rows property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setRows(BigInteger value)
+ {
+ this.rows = value;
+ }
+
+ /**
+ * Gets the value of the cols property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getCols()
+ {
+ return cols;
+ }
+
+ /**
+ * Sets the value of the cols property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setCols(BigInteger value)
+ {
+ this.cols = value;
+ }
+
+ /**
+ * Gets the value of the treeMethod property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getTreeMethod()
+ {
+ return treeMethod;
+ }
+
+ /**
+ * Sets the value of the treeMethod property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setTreeMethod(String value)
+ {
+ this.treeMethod = value;
+ }
+
+ /**
+ * Gets the value of the cutHeight property.
+ *
+ * @return possible object is {@link Double }
+ *
+ */
+ public Double getCutHeight()
+ {
+ return cutHeight;
+ }
+
+ /**
+ * Sets the value of the cutHeight property.
+ *
+ * @param value
+ * allowed object is {@link Double }
+ *
+ */
+ public void setCutHeight(Double value)
+ {
+ this.cutHeight = value;
+ }
+
+ /**
+ * Gets the value of the id property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getId()
+ {
+ return id;
+ }
+
+ /**
+ * Sets the value of the id property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setId(String value)
+ {
+ this.id = value;
+ }
}
git://source.jalview.org / jalview.git / blobdiff