-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
- */\r
-package uk.ac.ebi.www.picr.AccessionMappingService;\r
-\r
-public class AccessionMapperBindingStub extends org.apache.axis.client.Stub\r
- implements\r
- uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface\r
-{\r
- private java.util.Vector cachedSerClasses = new java.util.Vector();\r
-\r
- private java.util.Vector cachedSerQNames = new java.util.Vector();\r
-\r
- private java.util.Vector cachedSerFactories = new java.util.Vector();\r
-\r
- private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
-\r
- static org.apache.axis.description.OperationDesc[] _operations;\r
-\r
- static\r
- {\r
- _operations = new org.apache.axis.description.OperationDesc[3];\r
- _initOperationDesc1();\r
- }\r
-\r
- private static void _initOperationDesc1()\r
- {\r
- org.apache.axis.description.OperationDesc oper;\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getUPIForSequence");\r
- oper.addParameter(\r
- new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "sequence"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "searchDatabases"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String[].class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(\r
- new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "taxonId"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "onlyActive"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://model.picr.ebi.ac.uk", "UPEntry"));\r
- oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);\r
- oper.setReturnQName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "getUPIForSequenceReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[0] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getUPIForAccession");\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "accession"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "ac_version"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "searchDatabases"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String[].class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(\r
- new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "taxonId"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"),\r
- java.lang.String.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.addParameter(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "onlyActive"), new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
- org.apache.axis.description.ParameterDesc.IN, false, false);\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://model.picr.ebi.ac.uk", "UPEntry"));\r
- oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);\r
- oper.setReturnQName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "getUPIForAccessionReturn"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[1] = oper;\r
-\r
- oper = new org.apache.axis.description.OperationDesc();\r
- oper.setName("getMappedDatabaseNames");\r
- oper.setReturnType(new javax.xml.namespace.QName(\r
- "http://www.w3.org/2001/XMLSchema", "string"));\r
- oper.setReturnClass(java.lang.String[].class);\r
- oper.setReturnQName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "mappedDatabases"));\r
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
- oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
- _operations[2] = oper;\r
-\r
- }\r
-\r
- public AccessionMapperBindingStub() throws org.apache.axis.AxisFault\r
- {\r
- this(null);\r
- }\r
-\r
- public AccessionMapperBindingStub(java.net.URL endpointURL,\r
- javax.xml.rpc.Service service) throws org.apache.axis.AxisFault\r
- {\r
- this(service);\r
- super.cachedEndpoint = endpointURL;\r
- }\r
-\r
- public AccessionMapperBindingStub(javax.xml.rpc.Service service)\r
- throws org.apache.axis.AxisFault\r
- {\r
- if (service == null)\r
- {\r
- super.service = new org.apache.axis.client.Service();\r
- }\r
- else\r
- {\r
- super.service = service;\r
- }\r
- java.lang.Class cls;\r
- javax.xml.namespace.QName qName;\r
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
- java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
- java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
- java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
- java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
- java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
- java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
- qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
- "UPEntry");\r
- cachedSerQNames.add(qName);\r
- cls = uk.ac.ebi.picr.model.UPEntry.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
- "CrossReference");\r
- cachedSerQNames.add(qName);\r
- cls = uk.ac.ebi.picr.model.CrossReference.class;\r
- cachedSerClasses.add(cls);\r
- cachedSerFactories.add(beansf);\r
- cachedDeserFactories.add(beandf);\r
-\r
- }\r
-\r
- protected org.apache.axis.client.Call createCall()\r
- throws java.rmi.RemoteException\r
- {\r
- try\r
- {\r
- org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service\r
- .createCall();\r
- if (super.maintainSessionSet)\r
- {\r
- _call.setMaintainSession(super.maintainSession);\r
- }\r
- if (super.cachedUsername != null)\r
- {\r
- _call.setUsername(super.cachedUsername);\r
- }\r
- if (super.cachedPassword != null)\r
- {\r
- _call.setPassword(super.cachedPassword);\r
- }\r
- if (super.cachedEndpoint != null)\r
- {\r
- _call.setTargetEndpointAddress(super.cachedEndpoint);\r
- }\r
- if (super.cachedTimeout != null)\r
- {\r
- _call.setTimeout(super.cachedTimeout);\r
- }\r
- if (super.cachedPortName != null)\r
- {\r
- _call.setPortName(super.cachedPortName);\r
- }\r
- java.util.Enumeration keys = super.cachedProperties.keys();\r
- while (keys.hasMoreElements())\r
- {\r
- java.lang.String key = (java.lang.String) keys.nextElement();\r
- _call.setProperty(key, super.cachedProperties.get(key));\r
- }\r
- // All the type mapping information is registered\r
- // when the first call is made.\r
- // The type mapping information is actually registered in\r
- // the TypeMappingRegistry of the service, which\r
- // is the reason why registration is only needed for the first call.\r
- synchronized (this)\r
- {\r
- if (firstCall())\r
- {\r
- // must set encoding style before registering serializers\r
- _call.setEncodingStyle(null);\r
- for (int i = 0; i < cachedSerFactories.size(); ++i)\r
- {\r
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
- javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames\r
- .get(i);\r
- java.lang.Class sf = (java.lang.Class) cachedSerFactories\r
- .get(i);\r
- java.lang.Class df = (java.lang.Class) cachedDeserFactories\r
- .get(i);\r
- _call.registerTypeMapping(cls, qName, sf, df, false);\r
- }\r
- }\r
- }\r
- return _call;\r
- } catch (java.lang.Throwable _t)\r
- {\r
- throw new org.apache.axis.AxisFault(\r
- "Failure trying to get the Call object", _t);\r
- }\r
- }\r
-\r
- public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(\r
- java.lang.String sequence, java.lang.String[] searchDatabases,\r
- java.lang.String taxonId, boolean onlyActive)\r
- throws java.rmi.RemoteException\r
- {\r
- if (super.cachedEndpoint == null)\r
- {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[0]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("getUPIForSequence");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call\r
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "getUPIForSequence"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
- java.lang.Object _resp = _call\r
- .invoke(new java.lang.Object[]\r
- { sequence, searchDatabases, taxonId,\r
- new java.lang.Boolean(onlyActive) });\r
-\r
- if (_resp instanceof java.rmi.RemoteException)\r
- {\r
- throw (java.rmi.RemoteException) _resp;\r
- }\r
- else\r
- {\r
- extractAttachments(_call);\r
- try\r
- {\r
- return (uk.ac.ebi.picr.model.UPEntry) _resp;\r
- } catch (java.lang.Exception _exception)\r
- {\r
- return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils\r
- .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);\r
- }\r
- }\r
- }\r
-\r
- public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(\r
- java.lang.String accession, java.lang.String ac_version,\r
- java.lang.String[] searchDatabases, java.lang.String taxonId,\r
- boolean onlyActive) throws java.rmi.RemoteException\r
- {\r
- if (super.cachedEndpoint == null)\r
- {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[1]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("getUPIForAccession");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call\r
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "getUPIForAccession"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
- { accession, ac_version, searchDatabases, taxonId,\r
- new java.lang.Boolean(onlyActive) });\r
-\r
- if (_resp instanceof java.rmi.RemoteException)\r
- {\r
- throw (java.rmi.RemoteException) _resp;\r
- }\r
- else\r
- {\r
- extractAttachments(_call);\r
- try\r
- {\r
- return (uk.ac.ebi.picr.model.UPEntry[]) _resp;\r
- } catch (java.lang.Exception _exception)\r
- {\r
- return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils\r
- .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);\r
- }\r
- }\r
- }\r
-\r
- public java.lang.String[] getMappedDatabaseNames()\r
- throws java.rmi.RemoteException\r
- {\r
- if (super.cachedEndpoint == null)\r
- {\r
- throw new org.apache.axis.NoEndPointException();\r
- }\r
- org.apache.axis.client.Call _call = createCall();\r
- _call.setOperation(_operations[2]);\r
- _call.setUseSOAPAction(true);\r
- _call.setSOAPActionURI("getMappedDatabaseNames");\r
- _call.setEncodingStyle(null);\r
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
- Boolean.FALSE);\r
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
- Boolean.FALSE);\r
- _call\r
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
- _call.setOperationName(new javax.xml.namespace.QName(\r
- "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
- "getMappedDatabaseNames"));\r
-\r
- setRequestHeaders(_call);\r
- setAttachments(_call);\r
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
- {});\r
-\r
- if (_resp instanceof java.rmi.RemoteException)\r
- {\r
- throw (java.rmi.RemoteException) _resp;\r
- }\r
- else\r
- {\r
- extractAttachments(_call);\r
- try\r
- {\r
- return (java.lang.String[]) _resp;\r
- } catch (java.lang.Exception _exception)\r
- {\r
- return (java.lang.String[]) org.apache.axis.utils.JavaUtils\r
- .convert(_resp, java.lang.String[].class);\r
- }\r
- }\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package uk.ac.ebi.www.picr.AccessionMappingService;
+
+public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
+ implements
+ uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
+{
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ static org.apache.axis.description.OperationDesc[] _operations;
+
+ static
+ {
+ _operations = new org.apache.axis.description.OperationDesc[3];
+ _initOperationDesc1();
+ }
+
+ private static void _initOperationDesc1()
+ {
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getUPIForSequence");
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "sequence"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "searchDatabases"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String[].class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "taxonId"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "onlyActive"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://model.picr.ebi.ac.uk", "UPEntry"));
+ oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForSequenceReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getUPIForAccession");
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "accession"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "ac_version"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "searchDatabases"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String[].class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "taxonId"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "onlyActive"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://model.picr.ebi.ac.uk", "UPEntry"));
+ oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForAccessionReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getMappedDatabaseNames");
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String[].class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "mappedDatabases"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[2] = oper;
+
+ }
+
+ public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
+ {
+ this(null);
+ }
+
+ public AccessionMapperBindingStub(java.net.URL endpointURL,
+ javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+ {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public AccessionMapperBindingStub(javax.xml.rpc.Service service)
+ throws org.apache.axis.AxisFault
+ {
+ if (service == null)
+ {
+ super.service = new org.apache.axis.client.Service();
+ }
+ else
+ {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
+ "UPEntry");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.picr.model.UPEntry.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
+ "CrossReference");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.picr.model.CrossReference.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ protected org.apache.axis.client.Call createCall()
+ throws java.rmi.RemoteException
+ {
+ try
+ {
+ org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+ .createCall();
+ if (super.maintainSessionSet)
+ {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null)
+ {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null)
+ {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null)
+ {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null)
+ {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null)
+ {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements())
+ {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this)
+ {
+ if (firstCall())
+ {
+ // must set encoding style before registering serializers
+ _call.setEncodingStyle(null);
+ for (int i = 0; i < cachedSerFactories.size(); ++i)
+ {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+ .get(i);
+ java.lang.Class sf = (java.lang.Class) cachedSerFactories
+ .get(i);
+ java.lang.Class df = (java.lang.Class) cachedDeserFactories
+ .get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ } catch (java.lang.Throwable _t)
+ {
+ throw new org.apache.axis.AxisFault(
+ "Failure trying to get the Call object", _t);
+ }
+ }
+
+ public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
+ java.lang.String sequence, java.lang.String[] searchDatabases,
+ java.lang.String taxonId, boolean onlyActive)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getUPIForSequence");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForSequence"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {
+ sequence, searchDatabases, taxonId,
+ new java.lang.Boolean(onlyActive) });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (uk.ac.ebi.picr.model.UPEntry) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
+ .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
+ }
+ }
+ }
+
+ public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
+ java.lang.String accession, java.lang.String ac_version,
+ java.lang.String[] searchDatabases, java.lang.String taxonId,
+ boolean onlyActive) throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getUPIForAccession");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForAccession"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {
+ accession, ac_version, searchDatabases, taxonId,
+ new java.lang.Boolean(onlyActive) });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
+ .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
+ }
+ }
+ }
+
+ public java.lang.String[] getMappedDatabaseNames()
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getMappedDatabaseNames");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getMappedDatabaseNames"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (java.lang.String[]) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (java.lang.String[]) org.apache.axis.utils.JavaUtils
+ .convert(_resp, java.lang.String[].class);
+ }
+ }
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff