JAL-2011 adjust method to fix failing unit test

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 7661c5d..22bb680 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -2449,8 +2449,9 @@ public class AlignmentUtilsTests
   {
     SequenceI dna1 = new Sequence("dna1", "cccGGGTTTaaa");
     SequenceI dna2 = new Sequence("dna2", "CCCgggtttAAA");
-    SequenceI as1 = dna1.deriveSequence(), as2 = dna1.deriveSequence()
-            .getSubSequence(3, 7), as3 = dna2.deriveSequence();
+    SequenceI as1 = dna1.deriveSequence();
+    SequenceI as2 = dna1.deriveSequence().getSubSequence(3, 7);
+    SequenceI as3 = dna2.deriveSequence();
     as1.insertCharAt(6, 5, '-');
     String s_as1 = as1.getSequenceAsString();
     as2.insertCharAt(6, 5, '-');
@@ -2461,8 +2462,9 @@ public class AlignmentUtilsTests
 
     // why do we need to cast this still ?
     ((Alignment) aligned).createDatasetAlignment();
-    SequenceI uas1 = dna1.deriveSequence(), uas2 = dna1.deriveSequence()
-            .getSubSequence(3, 7), uas3 = dna2.deriveSequence();
+    SequenceI uas1 = dna1.deriveSequence();
+    SequenceI uas2 = dna1.deriveSequence().getSubSequence(3, 7);
+    SequenceI uas3 = dna2.deriveSequence();
     AlignmentI tobealigned = new Alignment(new SequenceI[] { uas1, uas2,
         uas3 });
     ((Alignment) tobealigned).createDatasetAlignment();