JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++

[jalview.git] / test / jalview / analysis / CrossRefTest.java

diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java
index b3c78be..7361af7 100644 (file)
--- a/test/jalview/analysis/CrossRefTest.java
+++ b/test/jalview/analysis/CrossRefTest.java
@@ -29,7 +29,6 @@ import static org.testng.AssertJUnit.assertSame;
 import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefEntry;
@@ -37,6 +36,7 @@ import jalview.datamodel.Mapping;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
+import jalview.datamodel.SequenceMapping;
 import jalview.gui.JvOptionPane;
 import jalview.util.DBRefUtils;
 import jalview.util.MapList;
@@ -311,9 +311,9 @@ public class CrossRefTest
     assertEquals(1, result.size());
     assertSame(dna1, result.get(0));
     // should now have a mapping from dna to pep1
-    List<SequenceToSequenceMapping> mappings = acf.getMappings();
+    List<SequenceMapping> mappings = acf.getMappings();
     assertEquals(1, mappings.size());
-    SequenceToSequenceMapping mapping = mappings.get(0);
+    SequenceMapping mapping = mappings.get(0);
     assertSame(dna1, mapping.getFromSeq());
     assertSame(pep1, mapping.getMapping().getTo());
     MapList mapList = mapping.getMapping().getMap();