JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix delegate of

[jalview.git] / test / jalview / analysis / scoremodels / ScoreMatrixTest.java

diff --git a/test/jalview/analysis/scoremodels/ScoreMatrixTest.java b/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
index cbc834d..fcc0bc3 100644 (file)
--- a/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
+++ b/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
@@ -56,4 +56,23 @@ public class ScoreMatrixTest
       }
     }
   }
+
+  @Test(groups = "Functional")
+  public void testGetMatrixIndex()
+  {
+    ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
+    assertEquals(sm.getMatrixIndex('A'), 0);
+    assertEquals(sm.getMatrixIndex('R'), 1);
+    assertEquals(sm.getMatrixIndex('r'), 1);
+    assertEquals(sm.getMatrixIndex('N'), 2);
+    assertEquals(sm.getMatrixIndex('D'), 3);
+    assertEquals(sm.getMatrixIndex('X'), 22);
+    assertEquals(sm.getMatrixIndex('x'), 22);
+    assertEquals(sm.getMatrixIndex(' '), 23);
+    assertEquals(sm.getMatrixIndex('*'), 24);
+    assertEquals(sm.getMatrixIndex('.'), -1);
+    assertEquals(sm.getMatrixIndex('-'), -1);
+    assertEquals(sm.getMatrixIndex('?'), -1);
+    assertEquals(sm.getMatrixIndex((char) 128), -1);
+  }
 }