JAL-2386 JAL-2570 use ResidueShader copy constructor in SequenceGroup

[jalview.git] / test / jalview / datamodel / SequenceGroupTest.java

diff --git a/test/jalview/datamodel/SequenceGroupTest.java b/test/jalview/datamodel/SequenceGroupTest.java
index 80790ed..b0af5c8 100644 (file)
--- a/test/jalview/datamodel/SequenceGroupTest.java
+++ b/test/jalview/datamodel/SequenceGroupTest.java
@@ -9,10 +9,12 @@ import static org.testng.Assert.assertSame;
 import static org.testng.Assert.assertTrue;
 import static org.testng.Assert.fail;
 
+import jalview.analysis.Conservation;
 import jalview.schemes.NucleotideColourScheme;
 import jalview.schemes.PIDColourScheme;
 
 import java.awt.Color;
+import java.util.Collections;
 
 import junit.extensions.PA;
 
@@ -232,6 +234,11 @@ public class SequenceGroupTest
     sg.setName("g1");
     sg.setDescription("desc");
     sg.setColourScheme(new PIDColourScheme());
+    Conservation cons = new Conservation("Cons", 2,
+            Collections.<SequenceI> emptyList(), 3, 12);
+    PA.setValue(cons, "consSequence", new Sequence("s", "abc"));
+    sg.getGroupColourScheme().setConservation(cons);
+    sg.getGroupColourScheme().setConsensus(new Profiles(null));
     sg.setDisplayBoxes(false);
     sg.setDisplayText(false);
     sg.setColourText(true);
@@ -253,8 +260,12 @@ public class SequenceGroupTest
     SequenceGroup sg2 = new SequenceGroup(sg);
     assertEquals(sg2.getName(), sg.getName());
     assertEquals(sg2.getDescription(), sg.getDescription());
-    assertSame(sg2.getGroupColourScheme(), sg.getGroupColourScheme());
+    assertNotSame(sg2.getGroupColourScheme(), sg.getGroupColourScheme());
     assertSame(sg2.getColourScheme(), sg.getColourScheme());
+    assertSame(PA.getValue(sg2.getGroupColourScheme(), "consensus"),
+            PA.getValue(sg.getGroupColourScheme(), "consensus"));
+    assertSame(PA.getValue(sg2.getGroupColourScheme(), "conservation"),
+            PA.getValue(sg.getGroupColourScheme(), "conservation"));
     assertEquals(sg2.getDisplayBoxes(), sg.getDisplayBoxes());
     assertEquals(sg2.getDisplayText(), sg.getDisplayText());
     assertEquals(sg2.getColourText(), sg.getColourText());