Updated with latest from mchmmer branch

[jalview.git] / test / jalview / datamodel / SequenceGroupTest.java

diff --git a/test/jalview/datamodel/SequenceGroupTest.java b/test/jalview/datamodel/SequenceGroupTest.java
index b0af5c8..df88268 100644 (file)
--- a/test/jalview/datamodel/SequenceGroupTest.java
+++ b/test/jalview/datamodel/SequenceGroupTest.java
@@ -16,10 +16,10 @@ import jalview.schemes.PIDColourScheme;
 import java.awt.Color;
 import java.util.Collections;
 
-import junit.extensions.PA;
-
 import org.testng.annotations.Test;
 
+import junit.extensions.PA;
+
 public class SequenceGroupTest
 {
   @Test(groups={"Functional"})
@@ -242,7 +242,7 @@ public class SequenceGroupTest
     sg.setDisplayBoxes(false);
     sg.setDisplayText(false);
     sg.setColourText(true);
-    sg.isDefined = true;
+    PA.setValue(sg, "isDefined", true);
     sg.setShowNonconserved(true);
     sg.setOutlineColour(Color.red);
     sg.setIdColour(Color.blue);
@@ -275,7 +275,7 @@ public class SequenceGroupTest
     assertEquals(sg2.thresholdTextColour, sg.thresholdTextColour);
     assertEquals(sg2.textColour, sg.textColour);
     assertEquals(sg2.textColour2, sg.textColour2);
-    assertEquals(sg2.getIgnoreGapsConsensus(), sg.getIgnoreGapsConsensus());
+    assertEquals(sg2.isIgnoreGapsConsensus(), sg.isIgnoreGapsConsensus());
     assertEquals(sg2.isShowSequenceLogo(), sg.isShowSequenceLogo());
     assertEquals(sg2.isNormaliseSequenceLogo(),
             sg.isNormaliseSequenceLogo());