JAL-3130 de-multi-release-jar.sh Script to make multi-release jar file single release.

[jalview.git] / test / jalview / datamodel / xdb / embl / EmblFileTest.java

diff --git a/test/jalview/datamodel/xdb/embl/EmblFileTest.java b/test/jalview/datamodel/xdb/embl/EmblFileTest.java
index 6955833..7510de1 100644 (file)
--- a/test/jalview/datamodel/xdb/embl/EmblFileTest.java
+++ b/test/jalview/datamodel/xdb/embl/EmblFileTest.java
@@ -24,14 +24,23 @@ import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertNull;
 
 import jalview.datamodel.DBRefEntry;
+import jalview.gui.JvOptionPane;
 
 import java.util.Vector;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class EmblFileTest
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Functional" })
   public void testGetEmblFile()
   {
@@ -80,9 +89,9 @@ public class EmblFileTest
     assertEquals("0", dbref.getVersion());
 
     /*
-     * two sequence features for CDS
+     * three sequence features for CDS
      */
-    assertEquals(2, entry.getFeatures().size());
+    assertEquals(3, entry.getFeatures().size());
     /*
      * first CDS
      */
@@ -140,6 +149,23 @@ public class EmblFileTest
     assertEquals("MSSS", q.getValues()[0]);
 
     /*
+     * third CDS
+     */
+    ef = entry.getFeatures().get(2);
+    assertEquals("CDS", ef.getName());
+    assertEquals("join(4..6,10..15)", ef.getLocation());
+    assertNull(ef.getDbRefs());
+    assertEquals(2, ef.getQualifiers().size());
+    q = ef.getQualifiers().get(0);
+    assertEquals("protein_id", q.getName());
+    assertEquals(1, q.getValues().length);
+    assertEquals("CAA12345.6", q.getValues()[0]);
+    q = ef.getQualifiers().get(1);
+    assertEquals("translation", q.getName());
+    assertEquals(1, q.getValues().length);
+    assertEquals("MSS", q.getValues()[0]);
+
+    /*
      * Sequence - verify newline not converted to space (JAL-2029)
      */
     EmblSequence seq = entry.getSequence();