JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN dbrefs

[jalview.git] / test / jalview / datamodel / xdb / embl / EmblTestHelper.java

diff --git a/test/jalview/datamodel/xdb/embl/EmblTestHelper.java b/test/jalview/datamodel/xdb/embl/EmblTestHelper.java
index 9957c72..6349164 100644 (file)
--- a/test/jalview/datamodel/xdb/embl/EmblTestHelper.java
+++ b/test/jalview/datamodel/xdb/embl/EmblTestHelper.java
@@ -38,6 +38,14 @@ public class EmblTestHelper
           + "<qualifier name=\"translation\"><value>MSSS</value></qualifier>"
           + "</feature>"
           /*
+           * third CDS is made up - has no xref - code should synthesize 
+           * one to an assumed EMBLCDSPROTEIN accession
+           */
+          + "<feature name=\"CDS\" location=\"join(4..6,10..15)\">"
+          + "<qualifier name=\"protein_id\"><value>CAA12345.6</value></qualifier>"
+          + "<qualifier name=\"translation\"><value>MSS</value></qualifier>"
+          + "</feature>"
+          /*
            * sequence (modified for test purposes)
            * emulates EMBL XML 1.2 which splits sequence data every 60 characters
            * see EmblSequence.setSequence