import jalview.datamodel.SequenceI;
import jalview.io.gff.SequenceOntologyFactory;
import jalview.io.gff.SequenceOntologyLite;
+import jalview.schemes.Colour;
import jalview.util.MapList;
-import java.awt.Color;
import java.util.List;
import org.testng.annotations.AfterClass;
public class EnsemblGeneTest
{
- @BeforeClass
+ @BeforeClass(alwaysRun = true)
public void setUp()
{
SequenceOntologyFactory.setInstance(new SequenceOntologyLite());
}
- @AfterClass
+ @AfterClass(alwaysRun = true)
public void tearDown()
{
SequenceOntologyFactory.setInstance(null);
assertTrue(fc.isFeatureDisplayed("sequence_variant"));
assertTrue(fc.isFeatureDisplayed("feature_variant")); // subtype
assertFalse(fc.isFeatureDisplayed("transcript"));
- assertEquals(Color.RED, fc.getFeatureColour("sequence_variant")
+ assertEquals(Colour.red, fc.getFeatureColour("sequence_variant")
.getColour());
- assertEquals(Color.RED, fc.getFeatureColour("feature_variant")
+ assertEquals(Colour.red, fc.getFeatureColour("feature_variant")
.getColour());
assertTrue(fc.getFeatureColour("exon").isColourByLabel());
assertTrue(fc.getFeatureColour("coding_exon").isColourByLabel());