JAL-3148 show/hide features on structure independent of alignment

[jalview.git] / test / jalview / ext / jmol / JmolCommandsTest.java

diff --git a/test/jalview/ext/jmol/JmolCommandsTest.java b/test/jalview/ext/jmol/JmolCommandsTest.java
index e42b54f..51bb885 100644 (file)
--- a/test/jalview/ext/jmol/JmolCommandsTest.java
+++ b/test/jalview/ext/jmol/JmolCommandsTest.java
@@ -66,7 +66,7 @@ public class JmolCommandsTest
     // need some mappings!
 
     StructureMappingcommandSet[] commands = JmolCommands
-            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
+            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel, false);
   }
 
   @Test(groups = { "Functional" })
@@ -108,7 +108,7 @@ public class JmolCommandsTest
     ssm.addStructureMapping(sm2);
   
     StructureMappingcommandSet[] commands = JmolCommands
-            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
+            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel, false);
     assertEquals(commands.length, 2);
     assertEquals(commands[0].commands.length, 1);