*/
package jalview.ext.paradise;
+import java.util.Locale;
+
import static org.testng.AssertJUnit.assertTrue;
import jalview.datamodel.AlignmentI;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
-import MCview.PDBfile;
-
import compbio.util.FileUtil;
+import mc_view.PDBfile;
public class TestAnnotate3D
{
{
{
SequenceI struseq = null;
- String sq_ = new String(sq.getSequence()).toLowerCase();
+ String sq_ = sq.getSequenceAsString().toLowerCase(Locale.ROOT);
for (SequenceI _struseq : pdbf.getSeqsAsArray())
{
- final String lowerCase = new String(_struseq.getSequence())
- .toLowerCase();
+ final String lowerCase = _struseq.getSequenceAsString()
+ .toLowerCase(Locale.ROOT);
if (lowerCase.equals(sq_))
{
struseq = _struseq;