JAL-2738 copy to spikes/mungo

[jalview.git] / test / jalview / gui / AlignFrameTest.java

diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java
index 2ea94a4..af9c045 100644 (file)
--- a/test/jalview/gui/AlignFrameTest.java
+++ b/test/jalview/gui/AlignFrameTest.java
@@ -85,11 +85,13 @@ public class AlignFrameTest
      */
     assertFalse(alignFrame.hideFeatureColumns("exon", true));
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
-    assertTrue(alignFrame.getViewport().getColumnSelection().getHiddenColumns()
+    assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
+            .getHiddenColumnsCopy()
             .isEmpty());
     assertFalse(alignFrame.hideFeatureColumns("exon", false));
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
-    assertTrue(alignFrame.getViewport().getColumnSelection().getHiddenColumns()
+    assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
+            .getHiddenColumnsCopy()
             .isEmpty());
 
     /*
@@ -97,8 +99,9 @@ public class AlignFrameTest
      */
     assertFalse(alignFrame.hideFeatureColumns("Metal", true));
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
-    List<int[]> hidden = alignFrame.getViewport().getColumnSelection()
-            .getHiddenColumns();
+    List<int[]> hidden = alignFrame.getViewport().getAlignment()
+            .getHiddenColumns()
+            .getHiddenColumnsCopy();
     assertTrue(hidden.isEmpty());
 
     /*
@@ -107,7 +110,8 @@ public class AlignFrameTest
      * [1-3], [6-8] base zero
      */
     assertTrue(alignFrame.hideFeatureColumns("Turn", true));
-    hidden = alignFrame.getViewport().getColumnSelection().getHiddenColumns();
+    hidden = alignFrame.getViewport().getAlignment().getHiddenColumns()
+            .getHiddenColumnsCopy();
     assertEquals(hidden.size(), 2);
     assertEquals(hidden.get(0)[0], 1);
     assertEquals(hidden.get(0)[1], 3);
@@ -540,10 +544,11 @@ public class AlignFrameTest
     assertEquals(af.alignPanel.getViewName(), "View 1");
     AlignViewport av2 = af.getViewport();
     assertNotSame(av, av2);
+    assertSame(av2, af.alignPanel.av);
     rs = av2.getResidueShading();
     assertNotSame(av.getResidueShading(), rs);
     assertEquals(rs.getThreshold(), 10);
-    assertTrue(rs.conservationApplied());
+    assertTrue(rs.conservationApplied(), rs.toString());
     assertEquals(rs.getConservationInc(), 20);
     assertEquals(av2.getAlignment().getGroups().size(), 1);
     sg = av2.getAlignment().getGroups().get(0);