JAL-3829 patch failing tests and todo for future

[jalview.git] / test / jalview / gui / structurechooser / StructureChooserQuerySourceTest.java

diff --git a/test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java b/test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java
index 59c4a50..414e8a7 100644 (file)
--- a/test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java
+++ b/test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java
@@ -45,6 +45,7 @@ import jalview.fts.core.FTSRestResponse;
 import jalview.fts.service.pdb.PDBFTSRestClient;
 import jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest;
 import jalview.gui.JvOptionPane;
+import jalview.gui.StructureChooser;
 import jalview.jbgui.FilterOption;
 
 public class StructureChooserQuerySourceTest
@@ -261,11 +262,16 @@ public class StructureChooserQuerySourceTest
     
     FTSRestResponse upResponse = null;
     FTSRestResponse pdbResponse = null;
-    
+    // TODO test available options
+    // Best coverage
+    // Best Alphafold Model
+    // Best model (by confidence score)
+    // Will also need to develop a more sophisticated filtering system
+    FilterOption opt = tdbquery.getAvailableFilterOptions(StructureChooser.VIEWS_FILTER).get(0);
     try {
-      upResponse = tdbquery.fetchStructuresMetaData(upSeq, tdbquery.getDocFieldPrefs().getStructureSummaryFields(),  null, false);
+      upResponse = tdbquery.fetchStructuresMetaData(upSeq, tdbquery.getDocFieldPrefs().getStructureSummaryFields(),  opt, false);
       // test ranking without additional PDBe data
-      FTSRestResponse firstRanked = tdbquery.selectFirstRankedQuery(upSeq, upResponse.getSearchSummary(), tdbquery.getDocFieldPrefs().getStructureSummaryFields(), "", false);
+      FTSRestResponse firstRanked = tdbquery.selectFirstRankedQuery(upSeq, upResponse.getSearchSummary(), tdbquery.getDocFieldPrefs().getStructureSummaryFields(), opt.getValue(), false);
       assertTrue(firstRanked.getNumberOfItemsFound()<upResponse.getNumberOfItemsFound());
       // NB Could have race condition here 
       String pdb_Query = tdbquery.buildPDBFTSQueryFor(upResponse);